miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31630 5' -63.4 NC_006879.1 + 14949 0.98 0.000604
Target:  5'- uCGCCCCACCGCCGCCAUGCU-GCAGCc -3'
miRNA:   3'- -GCGGGGUGGCGGCGGUACGAcCGUCG- -5'
31630 5' -63.4 NC_006879.1 + 8348 0.66 0.232874
Target:  5'- uGCUCCACUucuuccucgcggagGUCGCCGUGgCccgcucgcuccacggUGGCGGCc -3'
miRNA:   3'- gCGGGGUGG--------------CGGCGGUAC-G---------------ACCGUCG- -5'
31630 5' -63.4 NC_006879.1 + 15031 0.66 0.203913
Target:  5'- cCGCCaaCGCCGCCGCCGggagGGCccGCc -3'
miRNA:   3'- -GCGGg-GUGGCGGCGGUacgaCCGu-CG- -5'
31630 5' -63.4 NC_006879.1 + 17181 0.66 0.203378
Target:  5'- cCGCCgCCACCGCCGCCccccacgcgcccgAccguucccccccUGCcGGCuccgucGGCg -3'
miRNA:   3'- -GCGG-GGUGGCGGCGG-------------U------------ACGaCCG------UCG- -5'
31630 5' -63.4 NC_006879.1 + 15071 0.67 0.193436
Target:  5'- cCGCCaggCUGCUGCCGCCAUcGCUaGCauGGCc -3'
miRNA:   3'- -GCGG---GGUGGCGGCGGUA-CGAcCG--UCG- -5'
31630 5' -63.4 NC_006879.1 + 17248 0.67 0.178604
Target:  5'- uGUCCgCAcCCGUCGCCGUGCcucUGcCAGCc -3'
miRNA:   3'- gCGGG-GU-GGCGGCGGUACG---ACcGUCG- -5'
31630 5' -63.4 NC_006879.1 + 20842 0.67 0.173889
Target:  5'- uGCCUauuuUCGCCGCCA--CcGGCAGCg -3'
miRNA:   3'- gCGGGgu--GGCGGCGGUacGaCCGUCG- -5'
31630 5' -63.4 NC_006879.1 + 3346 0.67 0.173889
Target:  5'- cCGCUUCuGCUGCCGCUucuacUGCUcGCGGCa -3'
miRNA:   3'- -GCGGGG-UGGCGGCGGu----ACGAcCGUCG- -5'
31630 5' -63.4 NC_006879.1 + 19308 0.67 0.173889
Target:  5'- gGCCuCCACCcugGaaGCCAUGCUGcGCAa- -3'
miRNA:   3'- gCGG-GGUGG---CggCGGUACGAC-CGUcg -5'
31630 5' -63.4 NC_006879.1 + 11210 0.73 0.058613
Target:  5'- gCGUCCCAgCGCgcgCGCCuUGgaGGCGGCg -3'
miRNA:   3'- -GCGGGGUgGCG---GCGGuACgaCCGUCG- -5'
31630 5' -63.4 NC_006879.1 + 10213 0.73 0.069568
Target:  5'- aCGCCcaccaCCACCGCCGCg--GC-GGCAGUa -3'
miRNA:   3'- -GCGG-----GGUGGCGGCGguaCGaCCGUCG- -5'
31630 5' -63.4 NC_006879.1 + 23529 0.7 0.100433
Target:  5'- -cCCUCACCuggcagaCCGCCAUGggcguCUGGCAGCa -3'
miRNA:   3'- gcGGGGUGGc------GGCGGUAC-----GACCGUCG- -5'
31630 5' -63.4 NC_006879.1 + 6283 0.7 0.115452
Target:  5'- gCGCCCC-CCGCgG--AUGCUGGCucGCa -3'
miRNA:   3'- -GCGGGGuGGCGgCggUACGACCGu-CG- -5'
31630 5' -63.4 NC_006879.1 + 20643 0.69 0.140016
Target:  5'- gGCCCCucuCgGCCGCC-UGCgGGCucuucuguuGCa -3'
miRNA:   3'- gCGGGGu--GgCGGCGGuACGaCCGu--------CG- -5'
31630 5' -63.4 NC_006879.1 + 16173 0.68 0.160405
Target:  5'- uCGCCgCCGCCGCuccCGUCGUGCUcuGGCc-- -3'
miRNA:   3'- -GCGG-GGUGGCG---GCGGUACGA--CCGucg -5'
31630 5' -63.4 NC_006879.1 + 22105 0.72 0.077719
Target:  5'- gGCCCCuCUaCCGCCGUGUUGGUgaagaaccccgacAGCa -3'
miRNA:   3'- gCGGGGuGGcGGCGGUACGACCG-------------UCG- -5'
31630 5' -63.4 NC_006879.1 + 19954 0.66 0.22055
Target:  5'- aGCCCacgaACCcugaGuuGUUAUGCUGGUauGGCa -3'
miRNA:   3'- gCGGGg---UGG----CggCGGUACGACCG--UCG- -5'
31630 5' -63.4 NC_006879.1 + 11201 0.66 0.21488
Target:  5'- uCGuCCCCGgCGcCCGCCAgcgcccucUGCaGGCuguGCa -3'
miRNA:   3'- -GC-GGGGUgGC-GGCGGU--------ACGaCCGu--CG- -5'
31630 5' -63.4 NC_006879.1 + 11469 0.66 0.21488
Target:  5'- gGUCCaugGCCGCCGCCcagucaucGgaGGCGGUc -3'
miRNA:   3'- gCGGGg--UGGCGGCGGua------CgaCCGUCG- -5'
31630 5' -63.4 NC_006879.1 + 32747 0.66 0.209335
Target:  5'- aCGCagggACCGgCGUuacuuggagaCGUGCUGGCAGCg -3'
miRNA:   3'- -GCGggg-UGGCgGCG----------GUACGACCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.