Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31631 | 3' | -58.7 | NC_006879.1 | + | 16986 | 1.12 | 0.000169 |
Target: 5'- gCGCCUCCGAGACCGCAGAAGCGACCCa -3' miRNA: 3'- -GCGGAGGCUCUGGCGUCUUCGCUGGG- -5' |
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31631 | 3' | -58.7 | NC_006879.1 | + | 11403 | 0.74 | 0.116133 |
Target: 5'- cCGCCUCCGAuGACUG-GGcGGCGGCCa -3' miRNA: 3'- -GCGGAGGCU-CUGGCgUCuUCGCUGGg -5' |
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31631 | 3' | -58.7 | NC_006879.1 | + | 16084 | 0.72 | 0.162121 |
Target: 5'- uCGCCUCUGAcGCCG-AGggGCGGCg- -3' miRNA: 3'- -GCGGAGGCUcUGGCgUCuuCGCUGgg -5' |
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31631 | 3' | -58.7 | NC_006879.1 | + | 16028 | 0.71 | 0.196011 |
Target: 5'- cCGCC-CCucGG-CGuCAGAGGCGACCCg -3' miRNA: 3'- -GCGGaGGcuCUgGC-GUCUUCGCUGGG- -5' |
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31631 | 3' | -58.7 | NC_006879.1 | + | 25278 | 0.71 | 0.200793 |
Target: 5'- aGCC-CCaGAugggccuGGCCGCGGggGCcGCCCa -3' miRNA: 3'- gCGGaGG-CU-------CUGGCGUCuuCGcUGGG- -5' |
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31631 | 3' | -58.7 | NC_006879.1 | + | 10463 | 0.71 | 0.206774 |
Target: 5'- cCGCCUCCu-GACCGCu---GCGGuCCCu -3' miRNA: 3'- -GCGGAGGcuCUGGCGucuuCGCU-GGG- -5' |
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31631 | 3' | -58.7 | NC_006879.1 | + | 11834 | 0.71 | 0.218045 |
Target: 5'- aGCgCUCUGAGGCUGCugguguccGAGGUGcCCCa -3' miRNA: 3'- gCG-GAGGCUCUGGCGu-------CUUCGCuGGG- -5' |
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31631 | 3' | -58.7 | NC_006879.1 | + | 23726 | 0.7 | 0.235931 |
Target: 5'- gGCgCUCCGGGAagaugauguCCGcCAGAgcgcuGGCGACCg -3' miRNA: 3'- gCG-GAGGCUCU---------GGC-GUCU-----UCGCUGGg -5' |
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31631 | 3' | -58.7 | NC_006879.1 | + | 32484 | 0.7 | 0.235931 |
Target: 5'- aGCUUUauuGuACUGCAGGAGUGGCCCg -3' miRNA: 3'- gCGGAGgcuC-UGGCGUCUUCGCUGGG- -5' |
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31631 | 3' | -58.7 | NC_006879.1 | + | 15037 | 0.69 | 0.289659 |
Target: 5'- aCGCCgccgCCGGGAgggcCCGCcGAcaGGCuGCCCg -3' miRNA: 3'- -GCGGa---GGCUCU----GGCGuCU--UCGcUGGG- -5' |
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31631 | 3' | -58.7 | NC_006879.1 | + | 4413 | 0.68 | 0.312151 |
Target: 5'- uGCCgcaaCCGgugGGACCGUAGA--UGACCCc -3' miRNA: 3'- gCGGa---GGC---UCUGGCGUCUucGCUGGG- -5' |
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31631 | 3' | -58.7 | NC_006879.1 | + | 9273 | 0.68 | 0.327869 |
Target: 5'- -aCCUCCcaacuGcCCGCGGAcgccccccAGCGGCCCa -3' miRNA: 3'- gcGGAGGcu---CuGGCGUCU--------UCGCUGGG- -5' |
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31631 | 3' | -58.7 | NC_006879.1 | + | 11224 | 0.67 | 0.344164 |
Target: 5'- gCGCCUUgGAGGCgGCGG--GCuACCCc -3' miRNA: 3'- -GCGGAGgCUCUGgCGUCuuCGcUGGG- -5' |
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31631 | 3' | -58.7 | NC_006879.1 | + | 21240 | 0.67 | 0.352528 |
Target: 5'- uGCCaaccccguguUCCGcaacaGCCGCGGGAGCuccGGCCCu -3' miRNA: 3'- gCGG----------AGGCuc---UGGCGUCUUCG---CUGGG- -5' |
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31631 | 3' | -58.7 | NC_006879.1 | + | 9984 | 0.67 | 0.352528 |
Target: 5'- cCGCCUCaCGGGGCagaGCGugcccaccauGGAGCGcuuucGCCCc -3' miRNA: 3'- -GCGGAG-GCUCUGg--CGU----------CUUCGC-----UGGG- -5' |
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31631 | 3' | -58.7 | NC_006879.1 | + | 14966 | 0.67 | 0.369682 |
Target: 5'- uGCUgcagCCaGGGCCGUgcuGAGGCgGGCCCg -3' miRNA: 3'- gCGGa---GGcUCUGGCGu--CUUCG-CUGGG- -5' |
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31631 | 3' | -58.7 | NC_006879.1 | + | 11744 | 0.67 | 0.369682 |
Target: 5'- gCGCCUCCuucacGucGgUGguGAGGCGAUCCa -3' miRNA: 3'- -GCGGAGG-----CucUgGCguCUUCGCUGGG- -5' |
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31631 | 3' | -58.7 | NC_006879.1 | + | 25654 | 0.67 | 0.369682 |
Target: 5'- --aCUcCCGGGAgaGUaAGGAGCGGCCCg -3' miRNA: 3'- gcgGA-GGCUCUggCG-UCUUCGCUGGG- -5' |
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31631 | 3' | -58.7 | NC_006879.1 | + | 16652 | 0.67 | 0.3874 |
Target: 5'- gGCCgcgagCCGuG-CCGCGGAgccAGCGACg- -3' miRNA: 3'- gCGGa----GGCuCuGGCGUCU---UCGCUGgg -5' |
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31631 | 3' | -58.7 | NC_006879.1 | + | 12785 | 0.66 | 0.396466 |
Target: 5'- uCGCuCUCCcccGGcaACCGCGGgcGCGuuACCCg -3' miRNA: 3'- -GCG-GAGGc--UC--UGGCGUCuuCGC--UGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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