miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31631 5' -49.9 NC_006879.1 + 14390 0.66 0.863675
Target:  5'- gUAGAcggccuguucguuguAGAAGCUCuUGGcaugGACGGGcAGCa -3'
miRNA:   3'- -AUCU---------------UCUUUGAG-ACCa---CUGCCUcUCG- -5'
31631 5' -49.9 NC_006879.1 + 4629 0.66 0.832198
Target:  5'- cUGGAAG-AACUCUuaucccugGGUGG-GGAGAGg -3'
miRNA:   3'- -AUCUUCuUUGAGA--------CCACUgCCUCUCg -5'
31631 5' -49.9 NC_006879.1 + 15113 0.66 0.831227
Target:  5'- gAGAGGGAACguguaCUGGgugcgcgauucugUGACGG-GAGUc -3'
miRNA:   3'- aUCUUCUUUGa----GACC-------------ACUGCCuCUCG- -5'
31631 5' -49.9 NC_006879.1 + 10270 0.67 0.822378
Target:  5'- gAGGAGGAGCUggcuuuagacCUGGaaGAgGGAGAGg -3'
miRNA:   3'- aUCUUCUUUGA----------GACCa-CUgCCUCUCg -5'
31631 5' -49.9 NC_006879.1 + 294 0.68 0.770024
Target:  5'- cAGcAGuGAACUUUGGgcgcUGACGGGGAGg -3'
miRNA:   3'- aUCuUC-UUUGAGACC----ACUGCCUCUCg -5'
31631 5' -49.9 NC_006879.1 + 24391 0.68 0.758998
Target:  5'- -cGggGggGCUgCUuc-GACGGAGAGUg -3'
miRNA:   3'- auCuuCuuUGA-GAccaCUGCCUCUCG- -5'
31631 5' -49.9 NC_006879.1 + 34359 0.69 0.713518
Target:  5'- -uGggGuGACgcggGGUGGCGcGAGGGCg -3'
miRNA:   3'- auCuuCuUUGaga-CCACUGC-CUCUCG- -5'
31631 5' -49.9 NC_006879.1 + 92 0.69 0.713518
Target:  5'- -uGggGuGACgcggGGUGGCGcGAGGGCg -3'
miRNA:   3'- auCuuCuUUGaga-CCACUGC-CUCUCG- -5'
31631 5' -49.9 NC_006879.1 + 19221 0.69 0.713518
Target:  5'- cGGAAGuuccACUCguaGGUGuaggaacCGGGGAGCa -3'
miRNA:   3'- aUCUUCuu--UGAGa--CCACu------GCCUCUCG- -5'
31631 5' -49.9 NC_006879.1 + 23914 0.69 0.701877
Target:  5'- uUGGAAGAGguagcagugGCUCcacaGUGGgGGAGGGCa -3'
miRNA:   3'- -AUCUUCUU---------UGAGac--CACUgCCUCUCG- -5'
31631 5' -49.9 NC_006879.1 + 8070 0.7 0.630847
Target:  5'- gUAGAGGcgGCUCUGc-GcCGGGGGGCa -3'
miRNA:   3'- -AUCUUCuuUGAGACcaCuGCCUCUCG- -5'
31631 5' -49.9 NC_006879.1 + 17022 1.12 0.001183
Target:  5'- cUAGAAGAAACUCUGGUGACGGAGAGCa -3'
miRNA:   3'- -AUCUUCUUUGAGACCACUGCCUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.