Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31632 | 5' | -69.7 | NC_006879.1 | + | 25429 | 0.71 | 0.043588 |
Target: 5'- aCCCCGgCGCCAacucaacCCGCCuaguugGCCCgCCGCc -3' miRNA: 3'- gGGGGCgGCGGU-------GGCGG------CGGGgGGUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 19973 | 0.7 | 0.051506 |
Target: 5'- uCCCCUGauugggGCCACCGCCGUgCCCaGCc -3' miRNA: 3'- -GGGGGCgg----CGGUGGCGGCGgGGGgUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 8442 | 0.68 | 0.07613 |
Target: 5'- aCCUgGCCGCCACCGUggagcgagcgggccaCGgcgaCCUCCGCg -3' miRNA: 3'- gGGGgCGGCGGUGGCG---------------GCg---GGGGGUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 22265 | 0.69 | 0.069454 |
Target: 5'- -aCCCG-CGCCGCCGCCaUCCCCgGa -3' miRNA: 3'- ggGGGCgGCGGUGGCGGcGGGGGgUg -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 21111 | 0.69 | 0.0676 |
Target: 5'- gCCCCUGCCGCgGCUGgUGaUCCCCGa -3' miRNA: 3'- -GGGGGCGGCGgUGGCgGCgGGGGGUg -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 11199 | 0.69 | 0.064035 |
Target: 5'- gUCCCCGgCGcCCGCCaG-CGCCCUCUGCa -3' miRNA: 3'- -GGGGGCgGC-GGUGG-CgGCGGGGGGUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 111 | 0.7 | 0.054395 |
Target: 5'- aCCCCgGCC-CCGCCucGCUcCUCCCCGCu -3' miRNA: 3'- -GGGGgCGGcGGUGG--CGGcGGGGGGUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 7759 | 0.71 | 0.047192 |
Target: 5'- aCUCCCaCCGCCAaggcgaaggggaUGCCGCCCCaCCAa -3' miRNA: 3'- -GGGGGcGGCGGUg-----------GCGGCGGGG-GGUg -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 10083 | 0.71 | 0.047192 |
Target: 5'- uUCCCCGCCGCCGCa-CCcuugcgacuuuaCCCCCCGa -3' miRNA: 3'- -GGGGGCGGCGGUGgcGGc-----------GGGGGGUg -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 9333 | 0.71 | 0.043708 |
Target: 5'- cUCCUCGCCaCCAuCCGCCGCCUgaagaCCGCc -3' miRNA: 3'- -GGGGGCGGcGGU-GGCGGCGGGg----GGUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 8913 | 0.68 | 0.083868 |
Target: 5'- gUCCCCGUCGCagaGCUGCCggaggaacccguGCCCCUgGa -3' miRNA: 3'- -GGGGGCGGCGg--UGGCGG------------CGGGGGgUg -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 6089 | 0.68 | 0.083868 |
Target: 5'- cCCCCCGcCCGCCAacUUGCUagaUCCCCUGCc -3' miRNA: 3'- -GGGGGC-GGCGGU--GGCGGc--GGGGGGUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 8128 | 0.77 | 0.014862 |
Target: 5'- cCCCCCGgCGCagaGCCGCCucuaCCCCCCGg -3' miRNA: 3'- -GGGGGCgGCGg--UGGCGGc---GGGGGGUg -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 7808 | 0.66 | 0.109474 |
Target: 5'- gUCgUCGUCcCCACCGUCGUCCaCCCAg -3' miRNA: 3'- -GGgGGCGGcGGUGGCGGCGGG-GGGUg -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 11383 | 0.67 | 0.098452 |
Target: 5'- gCCCCGuCCGCCgGCCGCUGCaUCUaaaACa -3' miRNA: 3'- gGGGGC-GGCGG-UGGCGGCGgGGGg--UG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 4826 | 0.67 | 0.093342 |
Target: 5'- aCCCUCGCgGCC-CUGgaCGCCCaCCgGCu -3' miRNA: 3'- -GGGGGCGgCGGuGGCg-GCGGG-GGgUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 5830 | 0.67 | 0.091859 |
Target: 5'- aCCCUGCgCuCCAUCGCCaaguugcuuuccaacGCCCUCUACg -3' miRNA: 3'- gGGGGCG-GcGGUGGCGG---------------CGGGGGGUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 10467 | 0.67 | 0.090883 |
Target: 5'- uCCUCCGCCuCCugACCGCUGCggUCCCUAa -3' miRNA: 3'- -GGGGGCGGcGG--UGGCGGCG--GGGGGUg -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 5941 | 0.67 | 0.088485 |
Target: 5'- aUCCUGCCcgacgaGCgCACCGCCGUguUCCCCGa -3' miRNA: 3'- gGGGGCGG------CG-GUGGCGGCG--GGGGGUg -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 11143 | 0.67 | 0.088485 |
Target: 5'- gCUCCCGCCgGCgGCUGgCGCUCaCCGCc -3' miRNA: 3'- -GGGGGCGG-CGgUGGCgGCGGGgGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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