Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31632 | 5' | -69.7 | NC_006879.1 | + | 22069 | 0.69 | 0.069454 |
Target: 5'- gCCCUCGCCgGCC-CCGaCGUCCUUCAUg -3' miRNA: 3'- -GGGGGCGG-CGGuGGCgGCGGGGGGUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 21111 | 0.69 | 0.0676 |
Target: 5'- gCCCCUGCCGCgGCUGgUGaUCCCCGa -3' miRNA: 3'- -GGGGGCGGCGgUGGCgGCgGGGGGUg -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 11199 | 0.69 | 0.064035 |
Target: 5'- gUCCCCGgCGcCCGCCaG-CGCCCUCUGCa -3' miRNA: 3'- -GGGGGCgGC-GGUGG-CgGCGGGGGGUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 9426 | 0.69 | 0.062321 |
Target: 5'- uCCCCUGuCUGCCAUgcgagucgaGCCGaaCCCCCGCa -3' miRNA: 3'- -GGGGGC-GGCGGUGg--------CGGCg-GGGGGUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 19396 | 0.7 | 0.055897 |
Target: 5'- aUCCCCGCCaacGCCACCaGCgUGCCCaucuCCAUu -3' miRNA: 3'- -GGGGGCGG---CGGUGG-CG-GCGGGg---GGUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 111 | 0.7 | 0.054395 |
Target: 5'- aCCCCgGCC-CCGCCucGCUcCUCCCCGCu -3' miRNA: 3'- -GGGGgCGGcGGUGG--CGGcGGGGGGUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 34340 | 0.7 | 0.054395 |
Target: 5'- aCCCCgGCC-CCGCCucGCUcCUCCCCGCu -3' miRNA: 3'- -GGGGgCGGcGGUGG--CGGcGGGGGGUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 19973 | 0.7 | 0.051506 |
Target: 5'- uCCCCUGauugggGCCACCGCCGUgCCCaGCc -3' miRNA: 3'- -GGGGGCgg----CGGUGGCGGCGgGGGgUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 10083 | 0.71 | 0.047192 |
Target: 5'- uUCCCCGCCGCCGCa-CCcuugcgacuuuaCCCCCCGa -3' miRNA: 3'- -GGGGGCGGCGGUGgcGGc-----------GGGGGGUg -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 7759 | 0.71 | 0.047192 |
Target: 5'- aCUCCCaCCGCCAaggcgaaggggaUGCCGCCCCaCCAa -3' miRNA: 3'- -GGGGGcGGCGGUg-----------GCGGCGGGG-GGUg -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 9333 | 0.71 | 0.043708 |
Target: 5'- cUCCUCGCCaCCAuCCGCCGCCUgaagaCCGCc -3' miRNA: 3'- -GGGGGCGGcGGU-GGCGGCGGGg----GGUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 25429 | 0.71 | 0.043588 |
Target: 5'- aCCCCGgCGCCAacucaacCCGCCuaguugGCCCgCCGCc -3' miRNA: 3'- gGGGGCgGCGGU-------GGCGG------CGGGgGGUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 16448 | 0.71 | 0.040254 |
Target: 5'- aUCgCCGCCGCCAUCGgUGCCauaCCCGg -3' miRNA: 3'- -GGgGGCGGCGGUGGCgGCGGg--GGGUg -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 15025 | 0.72 | 0.039163 |
Target: 5'- gCgCUGCCGCCaacGCCGCCGCCgggagggCCCGCc -3' miRNA: 3'- gGgGGCGGCGG---UGGCGGCGGg------GGGUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 24736 | 0.72 | 0.038522 |
Target: 5'- aCCCgcugCCGuuGCCGCUGCCGCUggagauucgguggcgUCCCACc -3' miRNA: 3'- -GGG----GGCggCGGUGGCGGCGG---------------GGGGUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 23604 | 0.72 | 0.038101 |
Target: 5'- uCCUCUGCCGCCAgCGgCGCgCCCUg- -3' miRNA: 3'- -GGGGGCGGCGGUgGCgGCGgGGGGug -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 7924 | 0.72 | 0.033201 |
Target: 5'- uUCCCGCCGaCCucagcGCgGCCGCCCUCgACu -3' miRNA: 3'- gGGGGCGGC-GG-----UGgCGGCGGGGGgUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 9812 | 0.74 | 0.025186 |
Target: 5'- gCCCCCGCCacagucggcugGCCccuguACCGagaaCCGCCuCCCCACu -3' miRNA: 3'- -GGGGGCGG-----------CGG-----UGGC----GGCGG-GGGGUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 17255 | 0.74 | 0.024498 |
Target: 5'- -aCCCGUCGCCgugccucuGCCaGCCGCCCgCCCAg -3' miRNA: 3'- ggGGGCGGCGG--------UGG-CGGCGGG-GGGUg -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 34299 | 0.74 | 0.023829 |
Target: 5'- gCCCUCG-CGCCACC-CCGCgucaCCCCACg -3' miRNA: 3'- -GGGGGCgGCGGUGGcGGCGg---GGGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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