Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31633 | 3' | -64.7 | NC_006879.1 | + | 4691 | 0.67 | 0.164141 |
Target: 5'- gUCAGUCGCUugaaaagaUGCCCA-UGGCCGacGGCc -3' miRNA: 3'- -GGUCGGCGG--------GCGGGUcACCGGCa-CCG- -5' |
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31633 | 3' | -64.7 | NC_006879.1 | + | 4762 | 0.69 | 0.118951 |
Target: 5'- aCCAGCCGgUgggCGUCCAG-GGCCGcgagGGUu -3' miRNA: 3'- -GGUCGGCgG---GCGGGUCaCCGGCa---CCG- -5' |
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31633 | 3' | -64.7 | NC_006879.1 | + | 7838 | 0.7 | 0.100966 |
Target: 5'- gCAGCUGCCCGCuguCCAGgGaGUCGagGGCg -3' miRNA: 3'- gGUCGGCGGGCG---GGUCaC-CGGCa-CCG- -5' |
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31633 | 3' | -64.7 | NC_006879.1 | + | 9547 | 0.67 | 0.164141 |
Target: 5'- -aGGCCguGCUgGCCgAGagGGUCGUGGCc -3' miRNA: 3'- ggUCGG--CGGgCGGgUCa-CCGGCACCG- -5' |
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31633 | 3' | -64.7 | NC_006879.1 | + | 9818 | 0.66 | 0.202333 |
Target: 5'- cCCGGCgCcCCCGCCaCAGUcGGCU--GGCc -3' miRNA: 3'- -GGUCG-GcGGGCGG-GUCA-CCGGcaCCG- -5' |
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31633 | 3' | -64.7 | NC_006879.1 | + | 9836 | 0.67 | 0.17764 |
Target: 5'- gCCAGgugaUGCCgGCCgaGGUGGUCGcGGCc -3' miRNA: 3'- -GGUCg---GCGGgCGGg-UCACCGGCaCCG- -5' |
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31633 | 3' | -64.7 | NC_006879.1 | + | 12691 | 0.68 | 0.155661 |
Target: 5'- cCCAGuCUGUcuuCCGCCagCAGUGGUCG-GGUa -3' miRNA: 3'- -GGUC-GGCG---GGCGG--GUCACCGGCaCCG- -5' |
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31633 | 3' | -64.7 | NC_006879.1 | + | 14953 | 0.67 | 0.164141 |
Target: 5'- cCCAccGCCGCCaUGCugcagCCAG-GGCCGUgcugaGGCg -3' miRNA: 3'- -GGU--CGGCGG-GCG-----GGUCaCCGGCA-----CCG- -5' |
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31633 | 3' | -64.7 | NC_006879.1 | + | 15034 | 0.67 | 0.17764 |
Target: 5'- uCCGG--GCCCGCCuCAGcacGGCCcUGGCu -3' miRNA: 3'- -GGUCggCGGGCGG-GUCa--CCGGcACCG- -5' |
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31633 | 3' | -64.7 | NC_006879.1 | + | 17273 | 1.11 | 0.000052 |
Target: 5'- gCCAGCCGCCCGCCCAGUGGCCGUGGCc -3' miRNA: 3'- -GGUCGGCGGGCGGGUCACCGGCACCG- -5' |
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31633 | 3' | -64.7 | NC_006879.1 | + | 23613 | 0.7 | 0.092965 |
Target: 5'- gCCAGCgGCgCGCCCuGUGGuCCGguuucaGCg -3' miRNA: 3'- -GGUCGgCGgGCGGGuCACC-GGCac----CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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