Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 31633 | 5' | -59.7 | NC_006879.1 | + | 20132 | 0.66 | 0.322358 |
|
Target: 5'- -uGCCCC--AGGUCGGuGAgGGAGCCc -3' miRNA: 3'- uuUGGGGucUCCGGUCuCU-CCUCGGu -5' |
|||||||
| 31633 | 5' | -59.7 | NC_006879.1 | + | 4482 | 0.66 | 0.298745 |
|
Target: 5'- -uGCCgUCGGGGcGCaGGAGGGGAGCUAc -3' miRNA: 3'- uuUGG-GGUCUC-CGgUCUCUCCUCGGU- -5' |
|||||||
| 31633 | 5' | -59.7 | NC_006879.1 | + | 20633 | 0.68 | 0.242382 |
|
Target: 5'- cGGgCgUGGAGGCCAGAgcgcugcgcuuGAGGAGCCc -3' miRNA: 3'- uUUgGgGUCUCCGGUCU-----------CUCCUCGGu -5' |
|||||||
| 31633 | 5' | -59.7 | NC_006879.1 | + | 16249 | 0.68 | 0.235995 |
|
Target: 5'- -cACCgacaCGGGGGCCAGAGcacgacGGGAGCg- -3' miRNA: 3'- uuUGGg---GUCUCCGGUCUC------UCCUCGgu -5' |
|||||||
| 31633 | 5' | -59.7 | NC_006879.1 | + | 12710 | 0.7 | 0.164745 |
|
Target: 5'- --cCCCUAGAGGCCgccuccacgcuggAGAgGGGGAGCUc -3' miRNA: 3'- uuuGGGGUCUCCGG-------------UCU-CUCCUCGGu -5' |
|||||||
| 31633 | 5' | -59.7 | NC_006879.1 | + | 25277 | 0.71 | 0.143472 |
|
Target: 5'- cAGCCCCAGAugGGCCuGGccgcGGGGGCCGc -3' miRNA: 3'- uUUGGGGUCU--CCGGuCUc---UCCUCGGU- -5' |
|||||||
| 31633 | 5' | -59.7 | NC_006879.1 | + | 32822 | 0.74 | 0.087784 |
|
Target: 5'- -cGCCCCGGAGGCC-GAGAGGGaUCu -3' miRNA: 3'- uuUGGGGUCUCCGGuCUCUCCUcGGu -5' |
|||||||
| 31633 | 5' | -59.7 | NC_006879.1 | + | 20702 | 0.78 | 0.040502 |
|
Target: 5'- aGAGCCCgCAGGcGGCC-GAGAGGGGCCc -3' miRNA: 3'- -UUUGGG-GUCU-CCGGuCUCUCCUCGGu -5' |
|||||||
| 31633 | 5' | -59.7 | NC_006879.1 | + | 17308 | 1.06 | 0.000237 |
|
Target: 5'- gAAACCCCAGAGGCCAGAGAGGAGCCAa -3' miRNA: 3'- -UUUGGGGUCUCCGGUCUCUCCUCGGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home