miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31634 3' -51.9 NC_006879.1 + 9259 0.66 0.732544
Target:  5'- cGCgGACgcc--CCCCAgcGGCCCACc- -3'
miRNA:   3'- -CGgUUGaaaaaGGGGUa-CCGGGUGuu -5'
31634 3' -51.9 NC_006879.1 + 17417 0.66 0.7211
Target:  5'- --aGGCUUUUcacUCCCA-GGCCCACGAu -3'
miRNA:   3'- cggUUGAAAAa--GGGGUaCCGGGUGUU- -5'
31634 3' -51.9 NC_006879.1 + 8338 0.68 0.615157
Target:  5'- gGCCAugaacugcuccACUUcUUCCucgcggaggucgCCGUGGCCCGCu- -3'
miRNA:   3'- -CGGU-----------UGAAaAAGG------------GGUACCGGGUGuu -5'
31634 3' -51.9 NC_006879.1 + 25436 0.68 0.603303
Target:  5'- cGCCAACUcaa--CCCGccuaguUGGCCCGCc- -3'
miRNA:   3'- -CGGUUGAaaaagGGGU------ACCGGGUGuu -5'
31634 3' -51.9 NC_006879.1 + 23357 0.68 0.591478
Target:  5'- cGCCAggGCUacgUCCgCCA-GGCCUGCAAg -3'
miRNA:   3'- -CGGU--UGAaaaAGG-GGUaCCGGGUGUU- -5'
31634 3' -51.9 NC_006879.1 + 5643 0.68 0.567957
Target:  5'- uGCCGGCUUUUgagagggccuacUCaCCCGaacagcuggcucUGGUCCACAGc -3'
miRNA:   3'- -CGGUUGAAAA------------AG-GGGU------------ACCGGGUGUU- -5'
31634 3' -51.9 NC_006879.1 + 7235 0.69 0.556283
Target:  5'- cGCgaAACUUUUUCCCCAcGGCCa---- -3'
miRNA:   3'- -CGg-UUGAAAAAGGGGUaCCGGguguu -5'
31634 3' -51.9 NC_006879.1 + 15032 0.69 0.544679
Target:  5'- cGCCAACgccg-CCgCCGggagGGCCCGCc- -3'
miRNA:   3'- -CGGUUGaaaaaGG-GGUa---CCGGGUGuu -5'
31634 3' -51.9 NC_006879.1 + 23612 0.7 0.499145
Target:  5'- cGCCAGCggcgcgCCCUGUGGUCCGg-- -3'
miRNA:   3'- -CGGUUGaaaaa-GGGGUACCGGGUguu -5'
31634 3' -51.9 NC_006879.1 + 10865 0.71 0.43429
Target:  5'- aGCCAGCga---CCCUcgGGCuCCGCGAu -3'
miRNA:   3'- -CGGUUGaaaaaGGGGuaCCG-GGUGUU- -5'
31634 3' -51.9 NC_006879.1 + 5921 0.75 0.251128
Target:  5'- cGCCGugU---UCCCCgaguggcggugcGUGGCCCGCGAg -3'
miRNA:   3'- -CGGUugAaaaAGGGG------------UACCGGGUGUU- -5'
31634 3' -51.9 NC_006879.1 + 19278 1.09 0.001017
Target:  5'- cGCCAACUUUUUCCCCAUGGCCCACAAc -3'
miRNA:   3'- -CGGUUGAAAAAGGGGUACCGGGUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.