miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31634 5' -55.5 NC_006879.1 + 21467 0.66 0.564322
Target:  5'- uUCCUGGcGGCgaguuacccuauCAUGCaacgcGgGCAGCGACg -3'
miRNA:   3'- -GGGACCuUCG------------GUACGa----CgCGUUGCUG- -5'
31634 5' -55.5 NC_006879.1 + 14563 0.66 0.551965
Target:  5'- gCgCUGaAcuCCAcugauacUGCUGCGCAGCGGCa -3'
miRNA:   3'- -GgGACcUucGGU-------ACGACGCGUUGCUG- -5'
31634 5' -55.5 NC_006879.1 + 15938 0.66 0.541915
Target:  5'- gCCgUGGAAGCCAUGgaaaCGCAAaCGGa -3'
miRNA:   3'- -GGgACCUUCGGUACgac-GCGUU-GCUg -5'
31634 5' -55.5 NC_006879.1 + 16651 0.67 0.498072
Target:  5'- gCCgc-GAGCCGUGCcGCGgagcCAGCGACg -3'
miRNA:   3'- gGGaccUUCGGUACGaCGC----GUUGCUG- -5'
31634 5' -55.5 NC_006879.1 + 23941 0.67 0.487355
Target:  5'- -aCUGGAGuGCCAUGCcGCuGCAACc-- -3'
miRNA:   3'- ggGACCUU-CGGUACGaCG-CGUUGcug -5'
31634 5' -55.5 NC_006879.1 + 19357 0.67 0.476748
Target:  5'- uUCCagggUGGAGGCCGUGUUGUGggcCAugGGg -3'
miRNA:   3'- -GGG----ACCUUCGGUACGACGC---GUugCUg -5'
31634 5' -55.5 NC_006879.1 + 8188 0.68 0.435526
Target:  5'- gUCCUGGAuguGCCGUcuCUGCGUGAaGACc -3'
miRNA:   3'- -GGGACCUu--CGGUAc-GACGCGUUgCUG- -5'
31634 5' -55.5 NC_006879.1 + 21174 0.68 0.434522
Target:  5'- gCCCgacgucaUGGGAGCCcUGCaGCuGguGCGGCa -3'
miRNA:   3'- -GGG-------ACCUUCGGuACGaCG-CguUGCUG- -5'
31634 5' -55.5 NC_006879.1 + 1729 0.68 0.415702
Target:  5'- uCUgUGGAgGGCCAUGCUGCG-GAgGAg -3'
miRNA:   3'- -GGgACCU-UCGGUACGACGCgUUgCUg -5'
31634 5' -55.5 NC_006879.1 + 20630 0.7 0.31719
Target:  5'- gCgUGGAGGCCAgagcGCUGCGCuuGAgGAg -3'
miRNA:   3'- gGgACCUUCGGUa---CGACGCG--UUgCUg -5'
31634 5' -55.5 NC_006879.1 + 8553 0.71 0.271331
Target:  5'- gCCCaGGuGGUCAUGCgaGCGC-GCGACu -3'
miRNA:   3'- -GGGaCCuUCGGUACGa-CGCGuUGCUG- -5'
31634 5' -55.5 NC_006879.1 + 15220 0.72 0.250473
Target:  5'- uUCggGGAGGUCG-GCUGCGCAcCGGCa -3'
miRNA:   3'- gGGa-CCUUCGGUaCGACGCGUuGCUG- -5'
31634 5' -55.5 NC_006879.1 + 9066 0.72 0.24382
Target:  5'- uCCCUgcacGGggGCgCu--CUGCGCGGCGGCg -3'
miRNA:   3'- -GGGA----CCuuCG-GuacGACGCGUUGCUG- -5'
31634 5' -55.5 NC_006879.1 + 15014 0.73 0.218668
Target:  5'- gCCCUGGcuGCCAgcaugGCggcgGUGgGGCGACg -3'
miRNA:   3'- -GGGACCuuCGGUa----CGa---CGCgUUGCUG- -5'
31634 5' -55.5 NC_006879.1 + 33495 0.74 0.190378
Target:  5'- uCCCUGGAA-CUuuuGUGCUGCGUAGCcACa -3'
miRNA:   3'- -GGGACCUUcGG---UACGACGCGUUGcUG- -5'
31634 5' -55.5 NC_006879.1 + 15149 0.79 0.084545
Target:  5'- cUCCUGGGucuGGCCAUGCUaGCGaUGGCGGCa -3'
miRNA:   3'- -GGGACCU---UCGGUACGA-CGC-GUUGCUG- -5'
31634 5' -55.5 NC_006879.1 + 19315 1.12 0.000254
Target:  5'- aCCCUGGAAGCCAUGCUGCGCAACGACa -3'
miRNA:   3'- -GGGACCUUCGGUACGACGCGUUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.