Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31635 | 5' | -52.9 | NC_006879.1 | + | 19467 | 1.06 | 0.001129 |
Target: 5'- uUUCACCCGCCUCAAAACCAAGGAGACc -3' miRNA: 3'- -AAGUGGGCGGAGUUUUGGUUCCUCUG- -5' |
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31635 | 5' | -52.9 | NC_006879.1 | + | 4951 | 0.72 | 0.328464 |
Target: 5'- -aCGCCCGCUUCAGcACCAgcAGGAuGAg -3' miRNA: 3'- aaGUGGGCGGAGUUuUGGU--UCCU-CUg -5' |
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31635 | 5' | -52.9 | NC_006879.1 | + | 8716 | 0.7 | 0.402233 |
Target: 5'- --gGCCauggagCGUCUCGAAGCCAucGGAGACa -3' miRNA: 3'- aagUGG------GCGGAGUUUUGGUu-CCUCUG- -5' |
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31635 | 5' | -52.9 | NC_006879.1 | + | 7642 | 0.69 | 0.48569 |
Target: 5'- uUUCGCCCGCgCaccaGAAACCGgaGGGGGAa -3' miRNA: 3'- -AAGUGGGCG-Gag--UUUUGGU--UCCUCUg -5' |
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31635 | 5' | -52.9 | NC_006879.1 | + | 9988 | 0.68 | 0.534955 |
Target: 5'- -gCGCCCGCCUCAcGgggcagagcgugcccACCAuGGAGcGCu -3' miRNA: 3'- aaGUGGGCGGAGUuU---------------UGGUuCCUC-UG- -5' |
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31635 | 5' | -52.9 | NC_006879.1 | + | 5317 | 0.67 | 0.588205 |
Target: 5'- aUCGCCC-CCUCAAGucgguCUAcGGGGAUa -3' miRNA: 3'- aAGUGGGcGGAGUUUu----GGUuCCUCUG- -5' |
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31635 | 5' | -52.9 | NC_006879.1 | + | 10133 | 0.67 | 0.599933 |
Target: 5'- -aCGCuCCGCCcCAAuACgGAGGGGAg -3' miRNA: 3'- aaGUG-GGCGGaGUUuUGgUUCCUCUg -5' |
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31635 | 5' | -52.9 | NC_006879.1 | + | 725 | 0.66 | 0.635261 |
Target: 5'- cUCAgCCGCCUCAAAcagacauUCAGGGA-ACa -3' miRNA: 3'- aAGUgGGCGGAGUUUu------GGUUCCUcUG- -5' |
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31635 | 5' | -52.9 | NC_006879.1 | + | 5896 | 0.66 | 0.647047 |
Target: 5'- gUgGCCCGCgaguacgugcaaCUCAAcaucgccGCCAAGGAGAg -3' miRNA: 3'- aAgUGGGCG------------GAGUUu------UGGUUCCUCUg -5' |
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31635 | 5' | -52.9 | NC_006879.1 | + | 32166 | 0.66 | 0.647047 |
Target: 5'- -cCACCUGCCUgu--ACCAGGGAaACc -3' miRNA: 3'- aaGUGGGCGGAguuuUGGUUCCUcUG- -5' |
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31635 | 5' | -52.9 | NC_006879.1 | + | 15030 | 0.66 | 0.658817 |
Target: 5'- --gGCCCGCCUCAGcacGGCCcuGGcuGCc -3' miRNA: 3'- aagUGGGCGGAGUU---UUGGuuCCucUG- -5' |
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31635 | 5' | -52.9 | NC_006879.1 | + | 12538 | 0.66 | 0.663517 |
Target: 5'- uUUgACCUGCC-CGAAGCCGacgacggcuuucuuuGGGAcGACg -3' miRNA: 3'- -AAgUGGGCGGaGUUUUGGU---------------UCCU-CUG- -5' |
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31635 | 5' | -52.9 | NC_006879.1 | + | 11676 | 0.66 | 0.670558 |
Target: 5'- aUCuggaUCGCCUCAccACCGacgugaAGGAGGCg -3' miRNA: 3'- aAGug--GGCGGAGUuuUGGU------UCCUCUG- -5' |
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31635 | 5' | -52.9 | NC_006879.1 | + | 4292 | 0.66 | 0.682258 |
Target: 5'- aUCuCCCagGCCUUAAuuuCCGAGGGGGg -3' miRNA: 3'- aAGuGGG--CGGAGUUuu-GGUUCCUCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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