Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31636 | 3' | -55.7 | NC_006879.1 | + | 4161 | 0.7 | 0.338858 |
Target: 5'- --gGGGUCCCAuugccauuauuaUGGAUGAGUgCAUGg -3' miRNA: 3'- ccaCCUAGGGU------------ACCUACUCGgGUGCg -5' |
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31636 | 3' | -55.7 | NC_006879.1 | + | 4826 | 0.72 | 0.241093 |
Target: 5'- gGGUGG-UCUCGgugacggugaagGGAUGAGCCCcgggcuggGCGCu -3' miRNA: 3'- -CCACCuAGGGUa-----------CCUACUCGGG--------UGCG- -5' |
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31636 | 3' | -55.7 | NC_006879.1 | + | 10164 | 0.67 | 0.502154 |
Target: 5'- cGGcUGGGUCUCgacgcggacgucGUGGAUGcggGGCCagGCGCa -3' miRNA: 3'- -CC-ACCUAGGG------------UACCUAC---UCGGg-UGCG- -5' |
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31636 | 3' | -55.7 | NC_006879.1 | + | 13743 | 0.69 | 0.391959 |
Target: 5'- gGGUgGGAUCCCGUGaccaagcuGGUGAuGCCagGCGUg -3' miRNA: 3'- -CCA-CCUAGGGUAC--------CUACU-CGGg-UGCG- -5' |
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31636 | 3' | -55.7 | NC_006879.1 | + | 14871 | 0.66 | 0.578841 |
Target: 5'- cGUGGAUUCCGUGaucgacagcguGGUagcuggcgcucGGGCCUAUGCu -3' miRNA: 3'- cCACCUAGGGUAC-----------CUA-----------CUCGGGUGCG- -5' |
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31636 | 3' | -55.7 | NC_006879.1 | + | 19969 | 0.8 | 0.07357 |
Target: 5'- uGGUGGGUCCCAUGu---AGCCCACGa -3' miRNA: 3'- -CCACCUAGGGUACcuacUCGGGUGCg -5' |
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31636 | 3' | -55.7 | NC_006879.1 | + | 20146 | 1.14 | 0.000237 |
Target: 5'- aGGUGGAUCCCAUGGAUGAGCCCACGCu -3' miRNA: 3'- -CCACCUAGGGUACCUACUCGGGUGCG- -5' |
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31636 | 3' | -55.7 | NC_006879.1 | + | 20261 | 0.67 | 0.502154 |
Target: 5'- cGGUGcGG-CUgGUGGAUGcGCaCCACGUc -3' miRNA: 3'- -CCAC-CUaGGgUACCUACuCG-GGUGCG- -5' |
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31636 | 3' | -55.7 | NC_006879.1 | + | 20768 | 0.66 | 0.556575 |
Target: 5'- uGGUGGGguugugaUCCAUGGGggugUGAGgCCAgUGCa -3' miRNA: 3'- -CCACCUa------GGGUACCU----ACUCgGGU-GCG- -5' |
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31636 | 3' | -55.7 | NC_006879.1 | + | 23472 | 0.69 | 0.38274 |
Target: 5'- cGUGGAggaugCCCAUguaGGAgaccagguugcUGAGCuCCACGUu -3' miRNA: 3'- cCACCUa----GGGUA---CCU-----------ACUCG-GGUGCG- -5' |
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31636 | 3' | -55.7 | NC_006879.1 | + | 24704 | 0.66 | 0.556575 |
Target: 5'- cGGUGGcGUCCCAccuacggcUGGcuuugaGUGAGCCgGC-Cg -3' miRNA: 3'- -CCACC-UAGGGU--------ACC------UACUCGGgUGcG- -5' |
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31636 | 3' | -55.7 | NC_006879.1 | + | 32103 | 0.71 | 0.276495 |
Target: 5'- cGGUGGcgCUguUGGAgcgaaUGAGCUUugGCu -3' miRNA: 3'- -CCACCuaGGguACCU-----ACUCGGGugCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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