miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31636 5' -58.4 NC_006879.1 + 16815 0.66 0.435765
Target:  5'- uGGgGUGGUGaccgGCAUCCACgGcGCgGUa -3'
miRNA:   3'- gCUgCACCACg---CGUAGGUGgU-CGgCG- -5'
31636 5' -58.4 NC_006879.1 + 16679 0.66 0.434791
Target:  5'- cCGAUGUcguuccaGGUGCccaugaGCggCCGCgAGCCGUg -3'
miRNA:   3'- -GCUGCA-------CCACG------CGuaGGUGgUCGGCG- -5'
31636 5' -58.4 NC_006879.1 + 5089 0.66 0.434791
Target:  5'- aGGCGUcGGcuccgcacugaGCGCAgacggucucgcacUCCACCAGCCa- -3'
miRNA:   3'- gCUGCA-CCa----------CGCGU-------------AGGUGGUCGGcg -5'
31636 5' -58.4 NC_006879.1 + 8947 0.66 0.397825
Target:  5'- gCGACGcaUGGUcucggugacgGCGCGUCCGuuuuCCgaGGUCGCa -3'
miRNA:   3'- -GCUGC--ACCA----------CGCGUAGGU----GG--UCGGCG- -5'
31636 5' -58.4 NC_006879.1 + 14996 0.66 0.397825
Target:  5'- gCGGCgGUGGgGCGaCGucUCCGaugCAGCCGCc -3'
miRNA:   3'- -GCUG-CACCaCGC-GU--AGGUg--GUCGGCG- -5'
31636 5' -58.4 NC_006879.1 + 10105 0.67 0.388676
Target:  5'- aCGACGUc---CGCGUCgAgacCCAGCCGCg -3'
miRNA:   3'- -GCUGCAccacGCGUAGgU---GGUCGGCG- -5'
31636 5' -58.4 NC_006879.1 + 9343 0.67 0.388676
Target:  5'- aGACGUGGUccuccuCGCcaCCAUCcGCCGCc -3'
miRNA:   3'- gCUGCACCAc-----GCGuaGGUGGuCGGCG- -5'
31636 5' -58.4 NC_006879.1 + 5953 0.67 0.368165
Target:  5'- uGGCGc-GUGCGCAUCCugcccgacgagcgcACC-GCCGUg -3'
miRNA:   3'- gCUGCacCACGCGUAGG--------------UGGuCGGCG- -5'
31636 5' -58.4 NC_006879.1 + 21262 0.67 0.362072
Target:  5'- cCGGCGUGcugguguuccaGUGUGCcaaccccguguUCCGCaaCAGCCGCg -3'
miRNA:   3'- -GCUGCAC-----------CACGCGu----------AGGUG--GUCGGCG- -5'
31636 5' -58.4 NC_006879.1 + 7526 0.68 0.320615
Target:  5'- uGAUGUGGUGaaaGUAgaagucCCGCCGG-CGCa -3'
miRNA:   3'- gCUGCACCACg--CGUa-----GGUGGUCgGCG- -5'
31636 5' -58.4 NC_006879.1 + 11395 0.72 0.185443
Target:  5'- gGAucCGcGGUG-GCcccGUCCGCCGGCCGCu -3'
miRNA:   3'- gCU--GCaCCACgCG---UAGGUGGUCGGCG- -5'
31636 5' -58.4 NC_006879.1 + 5900 0.72 0.175598
Target:  5'- gGGCa-GGaUGCGCAcgCGCCAGCCGCg -3'
miRNA:   3'- gCUGcaCC-ACGCGUagGUGGUCGGCG- -5'
31636 5' -58.4 NC_006879.1 + 10261 0.75 0.10917
Target:  5'- gGugGUGGUGgGCGUCugaggucgCAUCuGCCGCa -3'
miRNA:   3'- gCugCACCACgCGUAG--------GUGGuCGGCG- -5'
31636 5' -58.4 NC_006879.1 + 20197 1.12 0.000176
Target:  5'- uCGACGUGGUGCGCAUCCACCAGCCGCa -3'
miRNA:   3'- -GCUGCACCACGCGUAGGUGGUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.