miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31637 3' -58.5 NC_006879.1 + 5935 0.66 0.377641
Target:  5'- ---gGGUGAugAGGuccacGCUGguGGCCAc -3'
miRNA:   3'- gaggUCGCUugUCCu----CGACguCCGGU- -5'
31637 3' -58.5 NC_006879.1 + 8451 0.66 0.35977
Target:  5'- uCUCCAaCGAccuggccgccACcguGGAGCgaGCGGGCCAc -3'
miRNA:   3'- -GAGGUcGCU----------UGu--CCUCGa-CGUCCGGU- -5'
31637 3' -58.5 NC_006879.1 + 24674 0.66 0.351058
Target:  5'- uCUCCAGCGGcagcggcaacgGCAGcGGGUa--AGGCCAa -3'
miRNA:   3'- -GAGGUCGCU-----------UGUC-CUCGacgUCCGGU- -5'
31637 3' -58.5 NC_006879.1 + 20787 0.67 0.337434
Target:  5'- aCUCCGGUGAGCAgauccaugguGGGGUugugauccaugggggUGUgAGGCCAg -3'
miRNA:   3'- -GAGGUCGCUUGU----------CCUCG---------------ACG-UCCGGU- -5'
31637 3' -58.5 NC_006879.1 + 8696 0.67 0.309775
Target:  5'- --aCGGCGAAguugaaaaauUGGGAGUUGCGGGCg- -3'
miRNA:   3'- gagGUCGCUU----------GUCCUCGACGUCCGgu -5'
31637 3' -58.5 NC_006879.1 + 34405 0.68 0.258354
Target:  5'- -aUgAGCGGGgAGGAGCgagGCGgGGCCGg -3'
miRNA:   3'- gaGgUCGCUUgUCCUCGa--CGU-CCGGU- -5'
31637 3' -58.5 NC_006879.1 + 46 0.68 0.258354
Target:  5'- -aUgAGCGGGgAGGAGCgagGCGgGGCCGg -3'
miRNA:   3'- gaGgUCGCUUgUCCUCGa--CGU-CCGGU- -5'
31637 3' -58.5 NC_006879.1 + 25709 0.69 0.245003
Target:  5'- uUCCAGCu--C-GGAGgaGCGGGCCGc -3'
miRNA:   3'- gAGGUCGcuuGuCCUCgaCGUCCGGU- -5'
31637 3' -58.5 NC_006879.1 + 9445 0.69 0.237906
Target:  5'- gUCgAGcCGAacccccGCAGGGGCUGCAgcaacgcuaggucGGCCAc -3'
miRNA:   3'- gAGgUC-GCU------UGUCCUCGACGU-------------CCGGU- -5'
31637 3' -58.5 NC_006879.1 + 10451 0.69 0.226055
Target:  5'- uUCgGGCGggUAGaGAGCUgaggGCGGGCUu -3'
miRNA:   3'- gAGgUCGCuuGUC-CUCGA----CGUCCGGu -5'
31637 3' -58.5 NC_006879.1 + 30487 0.69 0.22002
Target:  5'- uUgUAGCGGugGGGAgaGCUGUAGaGCCAc -3'
miRNA:   3'- gAgGUCGCUugUCCU--CGACGUC-CGGU- -5'
31637 3' -58.5 NC_006879.1 + 8352 0.76 0.074257
Target:  5'- aCUCgGGCGAcguACAGGAGauccucagGCAGGCCGc -3'
miRNA:   3'- -GAGgUCGCU---UGUCCUCga------CGUCCGGU- -5'
31637 3' -58.5 NC_006879.1 + 3067 0.77 0.056813
Target:  5'- aUCCAGCGAugAGGAGUgaggugagggGCGGaGCCAc -3'
miRNA:   3'- gAGGUCGCUugUCCUCGa---------CGUC-CGGU- -5'
31637 3' -58.5 NC_006879.1 + 20301 1.08 0.000244
Target:  5'- gCUCCAGCGAACAGGAGCUGCAGGCCAu -3'
miRNA:   3'- -GAGGUCGCUUGUCCUCGACGUCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.