Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31638 | 3' | -58.9 | NC_006879.1 | + | 20563 | 1.12 | 0.000126 |
Target: 5'- gGGGCUCCUCAAGCGCAGCGCUCUGGCc -3' miRNA: 3'- -CCCGAGGAGUUCGCGUCGCGAGACCG- -5' |
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31638 | 3' | -58.9 | NC_006879.1 | + | 10492 | 0.66 | 0.364984 |
Target: 5'- cGGCUCCugagggcggaggauuUCGAGCcCgacgAGCGUUCUGGg -3' miRNA: 3'- cCCGAGG---------------AGUUCGcG----UCGCGAGACCg -5' |
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31638 | 3' | -58.9 | NC_006879.1 | + | 9311 | 0.67 | 0.34436 |
Target: 5'- uGGGCccggCCUguugaauGCGCAgGCGCUC-GGCc -3' miRNA: 3'- -CCCGa---GGAguu----CGCGU-CGCGAGaCCG- -5' |
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31638 | 3' | -58.9 | NC_006879.1 | + | 5856 | 0.68 | 0.2789 |
Target: 5'- cGGGCcacgcaccgccaCUCGgggaacacGGCGguGCGCUCgucgGGCa -3' miRNA: 3'- -CCCGag----------GAGU--------UCGCguCGCGAGa---CCG- -5' |
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31638 | 3' | -58.9 | NC_006879.1 | + | 16595 | 0.68 | 0.274624 |
Target: 5'- uGGCUCCgcggCAcGGCucGCGGcCGCUCaugGGCa -3' miRNA: 3'- cCCGAGGa---GU-UCG--CGUC-GCGAGa--CCG- -5' |
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31638 | 3' | -58.9 | NC_006879.1 | + | 5095 | 0.7 | 0.21666 |
Target: 5'- cGGCUCCgcacUGAGCGCAGaCGgUCUcGCa -3' miRNA: 3'- cCCGAGGa---GUUCGCGUC-GCgAGAcCG- -5' |
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31638 | 3' | -58.9 | NC_006879.1 | + | 23635 | 0.79 | 0.0435 |
Target: 5'- cGGUUUCagCGAGCGCacggucgccAGCGCUCUGGCg -3' miRNA: 3'- cCCGAGGa-GUUCGCG---------UCGCGAGACCG- -5' |
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31638 | 3' | -58.9 | NC_006879.1 | + | 17368 | 0.66 | 0.397486 |
Target: 5'- uGGCUCCUCucuGGCcucUGGgGUUuCUGGCa -3' miRNA: 3'- cCCGAGGAGu--UCGc--GUCgCGA-GACCG- -5' |
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31638 | 3' | -58.9 | NC_006879.1 | + | 14425 | 0.66 | 0.388273 |
Target: 5'- uGGGU-----AAGCGCGGUGgaCUGGCg -3' miRNA: 3'- -CCCGaggagUUCGCGUCGCgaGACCG- -5' |
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31638 | 3' | -58.9 | NC_006879.1 | + | 11207 | 0.66 | 0.370272 |
Target: 5'- -cGCUCCUCGuccccGGCGCccgccAGCGCccUCUgcaGGCu -3' miRNA: 3'- ccCGAGGAGU-----UCGCG-----UCGCG--AGA---CCG- -5' |
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31638 | 3' | -58.9 | NC_006879.1 | + | 15092 | 0.7 | 0.199803 |
Target: 5'- cGGGC-CCUCccGGCgGCGGCGU--UGGCg -3' miRNA: 3'- -CCCGaGGAGu-UCG-CGUCGCGagACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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