miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31641 3' -51.4 NC_006879.1 + 1686 0.66 0.785119
Target:  5'- gCCACcugUCGUGGGAGUAcauGCuGGAUu -3'
miRNA:   3'- aGGUGa--GGCACCUUCGUuu-UGuCCUG- -5'
31641 3' -51.4 NC_006879.1 + 5869 0.66 0.785119
Target:  5'- gCCACUCgG-GGAacacGGCGgugcgcucgucGGGCAGGAUg -3'
miRNA:   3'- aGGUGAGgCaCCU----UCGU-----------UUUGUCCUG- -5'
31641 3' -51.4 NC_006879.1 + 22158 0.66 0.774449
Target:  5'- aCgGCUCCGUGGAGuuuCAAAGaaugaccaugaAGGACg -3'
miRNA:   3'- aGgUGAGGCACCUUc--GUUUUg----------UCCUG- -5'
31641 3' -51.4 NC_006879.1 + 8080 0.66 0.76361
Target:  5'- cUCUGCgCCG-GGggGCAgcggAGGCAGuGGCa -3'
miRNA:   3'- -AGGUGaGGCaCCuuCGU----UUUGUC-CUG- -5'
31641 3' -51.4 NC_006879.1 + 8437 0.67 0.741483
Target:  5'- gCCGCcaCCGUGGAgcgAGCGGGccACGGcGACc -3'
miRNA:   3'- aGGUGa-GGCACCU---UCGUUU--UGUC-CUG- -5'
31641 3' -51.4 NC_006879.1 + 23901 0.67 0.71885
Target:  5'- aCCACUCCGaccucaUGGAAGaCGuAAGCGGaGAg -3'
miRNA:   3'- aGGUGAGGC------ACCUUC-GU-UUUGUC-CUg -5'
31641 3' -51.4 NC_006879.1 + 14738 0.68 0.660788
Target:  5'- gCCACuUCCGUgcucccugGGGAGCuuacAAGCgAGGACu -3'
miRNA:   3'- aGGUG-AGGCA--------CCUUCGu---UUUG-UCCUG- -5'
31641 3' -51.4 NC_006879.1 + 19215 0.68 0.6455
Target:  5'- uUCCACUcguagguguaggaaCCG-GGGAGCAGcAGCAGGu- -3'
miRNA:   3'- -AGGUGA--------------GGCaCCUUCGUU-UUGUCCug -5'
31641 3' -51.4 NC_006879.1 + 5501 0.75 0.30506
Target:  5'- aUCAcCUUCGUGGAcGCGGAGgAGGACg -3'
miRNA:   3'- aGGU-GAGGCACCUuCGUUUUgUCCUG- -5'
31641 3' -51.4 NC_006879.1 + 21689 1.11 0.000856
Target:  5'- cUCCACUCCGUGGAAGCAAAACAGGACg -3'
miRNA:   3'- -AGGUGAGGCACCUUCGUUUUGUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.