Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31642 | 3' | -56.2 | NC_006879.1 | + | 11388 | 0.66 | 0.519844 |
Target: 5'- cGGUGGCccc-GUCCGCCggCCGCUGCa -3' miRNA: 3'- -CCAUCGacuuCGGGUGGa-GGUGGUGc -5' |
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31642 | 3' | -56.2 | NC_006879.1 | + | 22258 | 0.67 | 0.446529 |
Target: 5'- aGGgAGCUGAGGC--GCCUCCugCucGCGc -3' miRNA: 3'- -CCaUCGACUUCGggUGGAGGugG--UGC- -5' |
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31642 | 3' | -56.2 | NC_006879.1 | + | 20446 | 0.67 | 0.487771 |
Target: 5'- cGGgggGGUccacuGGCUCGCCUUCGCCugGa -3' miRNA: 3'- -CCa--UCGacu--UCGGGUGGAGGUGGugC- -5' |
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31642 | 3' | -56.2 | NC_006879.1 | + | 19456 | 0.67 | 0.466915 |
Target: 5'- aGG-GGCUGGAGuuucaCCCGCCUCaaaACCAa- -3' miRNA: 3'- -CCaUCGACUUC-----GGGUGGAGg--UGGUgc -5' |
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31642 | 3' | -56.2 | NC_006879.1 | + | 12041 | 0.69 | 0.350961 |
Target: 5'- uGGUGGCUcGAucGCCCACCggggccuuaacgCC-CCACa -3' miRNA: 3'- -CCAUCGA-CUu-CGGGUGGa-----------GGuGGUGc -5' |
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31642 | 3' | -56.2 | NC_006879.1 | + | 26068 | 0.69 | 0.379338 |
Target: 5'- aGUAGCUGAAGacgaUCGCCUCCcgaGCGu -3' miRNA: 3'- cCAUCGACUUCg---GGUGGAGGuggUGC- -5' |
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31642 | 3' | -56.2 | NC_006879.1 | + | 7781 | 0.7 | 0.311291 |
Target: 5'- gGGU-GCcGcAAGUCCAgaUCUCCGCCACGg -3' miRNA: 3'- -CCAuCGaC-UUCGGGU--GGAGGUGGUGC- -5' |
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31642 | 3' | -56.2 | NC_006879.1 | + | 14849 | 0.73 | 0.209521 |
Target: 5'- cGGUcGCU--AGCgCCGCCUCCACCGUGg -3' miRNA: 3'- -CCAuCGAcuUCG-GGUGGAGGUGGUGC- -5' |
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31642 | 3' | -56.2 | NC_006879.1 | + | 14894 | 0.73 | 0.209521 |
Target: 5'- uGGUAGCUGgcGCUCggGCCUaugcUCGCCGCa -3' miRNA: 3'- -CCAUCGACuuCGGG--UGGA----GGUGGUGc -5' |
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31642 | 3' | -56.2 | NC_006879.1 | + | 5943 | 0.73 | 0.203872 |
Target: 5'- aGGUccacGCUGguGgCCACCUCC-CCGCGg -3' miRNA: 3'- -CCAu---CGACuuCgGGUGGAGGuGGUGC- -5' |
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31642 | 3' | -56.2 | NC_006879.1 | + | 24901 | 0.74 | 0.172691 |
Target: 5'- --aAGCUaAGGCCU-CCUCCGCCGCGa -3' miRNA: 3'- ccaUCGAcUUCGGGuGGAGGUGGUGC- -5' |
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31642 | 3' | -56.2 | NC_006879.1 | + | 10922 | 0.81 | 0.057213 |
Target: 5'- --aAGCUGAGGCCCcucuCCUgCACCACGa -3' miRNA: 3'- ccaUCGACUUCGGGu---GGAgGUGGUGC- -5' |
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31642 | 3' | -56.2 | NC_006879.1 | + | 22151 | 1.11 | 0.000288 |
Target: 5'- gGGUAGCUGAAGCCCACCUCCACCACGg -3' miRNA: 3'- -CCAUCGACUUCGGGUGGAGGUGGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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