miRNA: 3'- uugaaauUGGCGG-GGCaGGGGGCAGU- -5'
miRNA: 3'- uugaaauUGGCGGGGca----GGGGGCAGu -5'
miRNA: 3'- uugaaaUUGGcGGGGCAGGGGGCAGu -5'
miRNA: 3'- -UUGaaauUGGCGGGGCAgGGGGCAGU- -5'
miRNA: 3'- -UUGAAAUUGGCGGGGCAGGGGGCAGU- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 31643 | 3' | -57 | NC_006879.1 | + | 16174 | 0.68 | 0.334088 |
|
Target: 5'- ------cGCCGCCgCCG-CUCCCGUCGu -3' miRNA: 3'- uugaaauUGGCGG-GGCaGGGGGCAGU- -5' |
|||||||
| 31643 | 3' | -57 | NC_006879.1 | + | 7734 | 0.71 | 0.226055 |
|
Target: 5'- ------uGCCGCCCCaccaagCCCCCGUCu -3' miRNA: 3'- uugaaauUGGCGGGGca----GGGGGCAGu -5' |
|||||||
| 31643 | 3' | -57 | NC_006879.1 | + | 20489 | 0.74 | 0.14496 |
|
Target: 5'- -----gGACCcCCCCGUCUCCCGUCc -3' miRNA: 3'- uugaaaUUGGcGGGGCAGGGGGCAGu -5' |
|||||||
| 31643 | 3' | -57 | NC_006879.1 | + | 8928 | 0.79 | 0.064013 |
|
Target: 5'- cGACguc-GCCGCCCCGU-CCCCGUCGc -3' miRNA: 3'- -UUGaaauUGGCGGGGCAgGGGGCAGU- -5' |
|||||||
| 31643 | 3' | -57 | NC_006879.1 | + | 22390 | 1.06 | 0.000544 |
|
Target: 5'- aAACUUUAACCGCCCCGUCCCCCGUCAg -3' miRNA: 3'- -UUGAAAUUGGCGGGGCAGGGGGCAGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home