Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31644 | 3' | -61.2 | NC_006879.1 | + | 15158 | 0.66 | 0.33435 |
Target: 5'- aCGUuccCUCUCCUGGGUCUggccaugcuaGCGAuGGCGg -3' miRNA: 3'- gGCGc--GAGAGGGUCCGGA----------UGCU-CCGC- -5' |
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31644 | 3' | -61.2 | NC_006879.1 | + | 17427 | 0.66 | 0.310955 |
Target: 5'- gCgGCGUUucaggcuuuucaCUCCCAGGCCcACGAuGCu -3' miRNA: 3'- -GgCGCGA------------GAGGGUCCGGaUGCUcCGc -5' |
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31644 | 3' | -61.2 | NC_006879.1 | + | 17760 | 0.66 | 0.288826 |
Target: 5'- aCGCGgUgucCUCCC-GGUCUACG-GGCa -3' miRNA: 3'- gGCGCgA---GAGGGuCCGGAUGCuCCGc -5' |
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31644 | 3' | -61.2 | NC_006879.1 | + | 9335 | 0.67 | 0.248316 |
Target: 5'- -gGCGCUCggccaugcCCCAGGCCUcgcucugacaGCGAcGCa -3' miRNA: 3'- ggCGCGAGa-------GGGUCCGGA----------UGCUcCGc -5' |
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31644 | 3' | -61.2 | NC_006879.1 | + | 11201 | 0.67 | 0.260611 |
Target: 5'- uCUGCaGUggcgUCCCAGcgcgcgcGCCUugGAGGCGg -3' miRNA: 3'- -GGCG-CGag--AGGGUC-------CGGAugCUCCGC- -5' |
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31644 | 3' | -61.2 | NC_006879.1 | + | 4287 | 0.71 | 0.134644 |
Target: 5'- uCUGCa-UCUCCCAGGCCUuaauuucCGAGGgGg -3' miRNA: 3'- -GGCGcgAGAGGGUCCGGAu------GCUCCgC- -5' |
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31644 | 3' | -61.2 | NC_006879.1 | + | 22635 | 1.1 | 0.000131 |
Target: 5'- gCCGCGCUCUCCCAGGCCUACGAGGCGa -3' miRNA: 3'- -GGCGCGAGAGGGUCCGGAUGCUCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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