Results 1 - 8 of 8 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 31646 | 5' | -57 | NC_006879.1 | + | 8406 | 0.66 | 0.401402 |
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Target: 5'- gGUCGUUGGagaUGCGACGCaUGAGUUGa -3' miRNA: 3'- -UAGCGACCgg-ACGUUGUG-GCUCGAUg -5' |
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| 31646 | 5' | -57 | NC_006879.1 | + | 9542 | 0.66 | 0.401402 |
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Target: 5'- -gUGCUGGCCgagaggGuCGugGCCGAccuagcguuGCUGCa -3' miRNA: 3'- uaGCGACCGGa-----C-GUugUGGCU---------CGAUG- -5' |
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| 31646 | 5' | -57 | NC_006879.1 | + | 20373 | 0.67 | 0.355193 |
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Target: 5'- gGUCGCgaacaaUGGCCUGCAGCucCUGuucGCUGg -3' miRNA: 3'- -UAGCG------ACCGGACGUUGu-GGCu--CGAUg -5' |
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| 31646 | 5' | -57 | NC_006879.1 | + | 16589 | 0.67 | 0.346413 |
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Target: 5'- cGUCGCUGGCUccGCGGCAC--GGCUcGCg -3' miRNA: 3'- -UAGCGACCGGa-CGUUGUGgcUCGA-UG- -5' |
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| 31646 | 5' | -57 | NC_006879.1 | + | 17748 | 0.7 | 0.227174 |
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Target: 5'- -aCGCUGGCCguagGgGACaACCGAGUgcuggACa -3' miRNA: 3'- uaGCGACCGGa---CgUUG-UGGCUCGa----UG- -5' |
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| 31646 | 5' | -57 | NC_006879.1 | + | 19614 | 0.72 | 0.181764 |
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Target: 5'- cGUCaGCUGGCCcgGCAACgACCGucuGCUGa -3' miRNA: 3'- -UAG-CGACCGGa-CGUUG-UGGCu--CGAUg -5' |
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| 31646 | 5' | -57 | NC_006879.1 | + | 9408 | 0.73 | 0.153164 |
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Target: 5'- cGUCGCUgucagagcgaGGCCUgggGCAugGCCGAGCgccUGCg -3' miRNA: 3'- -UAGCGA----------CCGGA---CGUugUGGCUCG---AUG- -5' |
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| 31646 | 5' | -57 | NC_006879.1 | + | 23981 | 1.07 | 0.000348 |
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Target: 5'- gAUCGCUGGCCUGCAACACCGAGCUACu -3' miRNA: 3'- -UAGCGACCGGACGUUGUGGCUCGAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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