miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31647 3' -54.1 NC_006879.1 + 22632 0.66 0.674591
Target:  5'- gUCG-CCGCGCUCUCCcaggccuaCGAGGCGa- -3'
miRNA:   3'- -GGCaGGUGUGAGAGGca------GCUUCGUcg -5'
31647 3' -54.1 NC_006879.1 + 24499 0.67 0.628268
Target:  5'- gCUGUcCCACAuCUCUuccUCGUCcuccacugcugcuGGAGCAGCu -3'
miRNA:   3'- -GGCA-GGUGU-GAGA---GGCAG-------------CUUCGUCG- -5'
31647 3' -54.1 NC_006879.1 + 5153 0.67 0.595492
Target:  5'- aCCGUCUGCGCUCagUG-CGGAGCcgacGCc -3'
miRNA:   3'- -GGCAGGUGUGAGagGCaGCUUCGu---CG- -5'
31647 3' -54.1 NC_006879.1 + 5944 0.68 0.573035
Target:  5'- -gGUCCACGCUgguggccacCUCCccgCGGAGgGGCu -3'
miRNA:   3'- ggCAGGUGUGA---------GAGGca-GCUUCgUCG- -5'
31647 3' -54.1 NC_006879.1 + 7778 0.68 0.573035
Target:  5'- cCCGggugCCGCAaguccagaUCUCCGccaCGGAGgGGCg -3'
miRNA:   3'- -GGCa---GGUGUg-------AGAGGCa--GCUUCgUCG- -5'
31647 3' -54.1 NC_006879.1 + 13462 0.68 0.561878
Target:  5'- gCGUgCC-CGC-CUCCGUCGggGUgaAGUc -3'
miRNA:   3'- gGCA-GGuGUGaGAGGCAGCuuCG--UCG- -5'
31647 3' -54.1 NC_006879.1 + 22120 0.68 0.538654
Target:  5'- gCCGUCCGCGCgacguaCUCUG-CGcaccggaGGGUAGCu -3'
miRNA:   3'- -GGCAGGUGUGa-----GAGGCaGC-------UUCGUCG- -5'
31647 3' -54.1 NC_006879.1 + 10542 0.69 0.485887
Target:  5'- cCCGgcCCGCGCUCa-CGUCucGGCGGCc -3'
miRNA:   3'- -GGCa-GGUGUGAGagGCAGcuUCGUCG- -5'
31647 3' -54.1 NC_006879.1 + 11304 0.7 0.41513
Target:  5'- aUCGUCC-CGaucCUCcUCGUCGggGUAGCc -3'
miRNA:   3'- -GGCAGGuGU---GAGaGGCAGCuuCGUCG- -5'
31647 3' -54.1 NC_006879.1 + 24324 1.13 0.000452
Target:  5'- cCCGUCCACACUCUCCGUCGAAGCAGCc -3'
miRNA:   3'- -GGCAGGUGUGAGAGGCAGCUUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.