miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31647 5' -59.6 NC_006879.1 + 22459 0.66 0.315862
Target:  5'- -cGCCGCCCGAGgaucuggaGGGGCCuGaCCGGcGCGa -3'
miRNA:   3'- uaCGGCGGGUUC--------CCUUGG-C-GGUU-CGU- -5'
31647 5' -59.6 NC_006879.1 + 9205 0.67 0.277902
Target:  5'- -gGCCGCUgGGGGGcguCCG-CGGGCAg -3'
miRNA:   3'- uaCGGCGGgUUCCCuu-GGCgGUUCGU- -5'
31647 5' -59.6 NC_006879.1 + 14746 0.67 0.256923
Target:  5'- cGUGCU-CCCuGGGGAGCUuaCAAGCGa -3'
miRNA:   3'- -UACGGcGGGuUCCCUUGGcgGUUCGU- -5'
31647 5' -59.6 NC_006879.1 + 17265 0.67 0.250224
Target:  5'- -aGCCGgCaggGGGGGAACgGUCGGGCGc -3'
miRNA:   3'- uaCGGCgGg--UUCCCUUGgCGGUUCGU- -5'
31647 5' -59.6 NC_006879.1 + 15065 0.68 0.237258
Target:  5'- -gGCUGCCCGccAGGcugcuGCCGCCAucgcuAGCAu -3'
miRNA:   3'- uaCGGCGGGU--UCCcu---UGGCGGU-----UCGU- -5'
31647 5' -59.6 NC_006879.1 + 9017 0.69 0.203931
Target:  5'- -cGCC-CCCGugcAGGGAggguaagugguuaggGCCGUCGGGCAg -3'
miRNA:   3'- uaCGGcGGGU---UCCCU---------------UGGCGGUUCGU- -5'
31647 5' -59.6 NC_006879.1 + 21393 0.69 0.201712
Target:  5'- -cGCUGCCCGcguugcaugauAGGGuaacucGCCGCCAGGa- -3'
miRNA:   3'- uaCGGCGGGU-----------UCCCu-----UGGCGGUUCgu -5'
31647 5' -59.6 NC_006879.1 + 5035 0.69 0.180663
Target:  5'- -aGCUGCgcgCCAAGGGAcacGCgGCCGAGUc -3'
miRNA:   3'- uaCGGCG---GGUUCCCU---UGgCGGUUCGu -5'
31647 5' -59.6 NC_006879.1 + 19596 0.7 0.157106
Target:  5'- gGUGCCGUCCAgguAGGGGAUggaGCCGgAGUAg -3'
miRNA:   3'- -UACGGCGGGU---UCCCUUGg--CGGU-UCGU- -5'
31647 5' -59.6 NC_006879.1 + 24361 1.06 0.00024
Target:  5'- cAUGCCGCCCAAGGGAACCGCCAAGCAg -3'
miRNA:   3'- -UACGGCGGGUUCCCUUGGCGGUUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.