miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31648 5' -64.1 NC_006879.1 + 13139 0.66 0.228801
Target:  5'- gCCGGCGGCguaUGAGGgUCC-GCCCCCu- -3'
miRNA:   3'- -GGCUGUCG---GCUUCgGGGcCGGGGGcu -5'
31648 5' -64.1 NC_006879.1 + 10519 0.66 0.228801
Target:  5'- cCCGACgAGCguucUGggGUgagCCCGGCCCgCGc -3'
miRNA:   3'- -GGCUG-UCG----GCuuCG---GGGCCGGGgGCu -5'
31648 5' -64.1 NC_006879.1 + 16175 0.67 0.196239
Target:  5'- gCCG-CcGCCGcucccgucguGCUCUGGCCCCCGu -3'
miRNA:   3'- -GGCuGuCGGCuu--------CGGGGCCGGGGGCu -5'
31648 5' -64.1 NC_006879.1 + 14812 0.67 0.186318
Target:  5'- gCCGugAuuGCCGAcGCCcgCCGGUacaaCCCCGGa -3'
miRNA:   3'- -GGCugU--CGGCUuCGG--GGCCG----GGGGCU- -5'
31648 5' -64.1 NC_006879.1 + 21296 0.69 0.143107
Target:  5'- aCCGAC--CCGAcGGCCCUGGCcaguauccacaaCCCCGGc -3'
miRNA:   3'- -GGCUGucGGCU-UCGGGGCCG------------GGGGCU- -5'
31648 5' -64.1 NC_006879.1 + 14727 0.69 0.13933
Target:  5'- gCCGuACAucuuGCCGGAGCCCa-GUCCCCa- -3'
miRNA:   3'- -GGC-UGU----CGGCUUCGGGgcCGGGGGcu -5'
31648 5' -64.1 NC_006879.1 + 8910 0.69 0.13528
Target:  5'- cCCGucgcagaGCuGCCGGAGgaaCCCGuGCCCCUGGa -3'
miRNA:   3'- -GGC-------UGuCGGCUUCg--GGGC-CGGGGGCU- -5'
31648 5' -64.1 NC_006879.1 + 22055 0.7 0.121781
Target:  5'- aCGGCGGUagaGggGCCcucgCCGGCCCCg-- -3'
miRNA:   3'- gGCUGUCGg--CuuCGG----GGCCGGGGgcu -5'
31648 5' -64.1 NC_006879.1 + 20859 0.72 0.085331
Target:  5'- aCCGGCAGCgcauCGAacgGGCCaCGGCCUUCGAa -3'
miRNA:   3'- -GGCUGUCG----GCU---UCGGgGCCGGGGGCU- -5'
31648 5' -64.1 NC_006879.1 + 8199 0.72 0.080739
Target:  5'- gCCGucuCuGCgUGAAGaCCaCCGGCCCCCGGg -3'
miRNA:   3'- -GGCu--GuCG-GCUUC-GG-GGCCGGGGGCU- -5'
31648 5' -64.1 NC_006879.1 + 24657 0.72 0.076383
Target:  5'- gUCGGgGGCCGggGCUUCGGCUgUCGGc -3'
miRNA:   3'- -GGCUgUCGGCuuCGGGGCCGGgGGCU- -5'
31648 5' -64.1 NC_006879.1 + 21226 0.75 0.05164
Target:  5'- uCCGcaACAGCCGcggGAGCUCCGGCCCUaacugCGAc -3'
miRNA:   3'- -GGC--UGUCGGC---UUCGGGGCCGGGG-----GCU- -5'
31648 5' -64.1 NC_006879.1 + 24597 1.09 0.000092
Target:  5'- gCCGACAGCCGAAGCCCCGGCCCCCGAc -3'
miRNA:   3'- -GGCUGUCGGCUUCGGGGCCGGGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.