miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31649 3' -57.1 NC_006879.1 + 7984 0.66 0.476482
Target:  5'- --aGGCGUagaggaggCCGuGUCCGCgCGggGCCAc -3'
miRNA:   3'- uugCCGUA--------GGCuCGGGUG-GCuuUGGU- -5'
31649 3' -57.1 NC_006879.1 + 17289 0.66 0.466075
Target:  5'- uGCGGaca-CGGGuCCCGCCGAcggAGCCGg -3'
miRNA:   3'- uUGCCguagGCUC-GGGUGGCU---UUGGU- -5'
31649 3' -57.1 NC_006879.1 + 14929 0.66 0.465041
Target:  5'- aGGCGGCugcAUCgGAGacgucgcCCCACCGccGCCAu -3'
miRNA:   3'- -UUGCCG---UAGgCUC-------GGGUGGCuuUGGU- -5'
31649 3' -57.1 NC_006879.1 + 10037 0.66 0.455788
Target:  5'- cGGCGGCggggaaccccgGUUCGAGaCCgGCCGGAuccGCCGc -3'
miRNA:   3'- -UUGCCG-----------UAGGCUC-GGgUGGCUU---UGGU- -5'
31649 3' -57.1 NC_006879.1 + 16656 0.66 0.435587
Target:  5'- gAGCGGCcg-CGAGCCgUGCCGcgGAGCCAg -3'
miRNA:   3'- -UUGCCGuagGCUCGG-GUGGC--UUUGGU- -5'
31649 3' -57.1 NC_006879.1 + 10255 0.67 0.396794
Target:  5'- gGugGGCGUCUGAggucgcaucuGCCgcagCACCGGAugCAu -3'
miRNA:   3'- -UugCCGUAGGCU----------CGG----GUGGCUUugGU- -5'
31649 3' -57.1 NC_006879.1 + 7823 0.67 0.387448
Target:  5'- uGCGGCAcCCGGGgcgucgucgucCCCACCGucguCCAc -3'
miRNA:   3'- uUGCCGUaGGCUC-----------GGGUGGCuuu-GGU- -5'
31649 3' -57.1 NC_006879.1 + 24580 0.67 0.369197
Target:  5'- cAGCGcGCcuucUCUGAGCCgacaGCCGAAGCCc -3'
miRNA:   3'- -UUGC-CGu---AGGCUCGGg---UGGCUUUGGu -5'
31649 3' -57.1 NC_006879.1 + 22700 0.69 0.310078
Target:  5'- cAACGGCAccUgCGAGCCCAacCCGcGACuCAa -3'
miRNA:   3'- -UUGCCGU--AgGCUCGGGU--GGCuUUG-GU- -5'
31649 3' -57.1 NC_006879.1 + 23694 0.69 0.310078
Target:  5'- -cUGGCGaCCGugcGCUCGCUGAAACCGg -3'
miRNA:   3'- uuGCCGUaGGCu--CGGGUGGCUUUGGU- -5'
31649 3' -57.1 NC_006879.1 + 12044 0.73 0.1715
Target:  5'- aGAUGGUggCuCGAucGCCCACCGggGCCu -3'
miRNA:   3'- -UUGCCGuaG-GCU--CGGGUGGCuuUGGu -5'
31649 3' -57.1 NC_006879.1 + 3671 0.73 0.166745
Target:  5'- aGACaGGUGgacCCGAGCCUACCG-AGCCAa -3'
miRNA:   3'- -UUG-CCGUa--GGCUCGGGUGGCuUUGGU- -5'
31649 3' -57.1 NC_006879.1 + 25369 1.06 0.000516
Target:  5'- uAACGGCAUCCGAGCCCACCGAAACCAg -3'
miRNA:   3'- -UUGCCGUAGGCUCGGGUGGCUUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.