miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31649 5' -60 NC_006879.1 + 21286 0.68 0.273719
Target:  5'- cGGCccUgGCCaguauCCACaACCCCGGCGUg -3'
miRNA:   3'- -CCGuuAgUGGc----GGUG-UGGGGCCGCGg -5'
31649 5' -60 NC_006879.1 + 10064 0.68 0.260161
Target:  5'- cGGCcggauCCGCCGC-UCCCGauGCGCCu -3'
miRNA:   3'- -CCGuuaguGGCGGUGuGGGGC--CGCGG- -5'
31649 5' -60 NC_006879.1 + 11080 0.68 0.260161
Target:  5'- aGGCGGUgAgCGCCA-GCCgCCGGCGg- -3'
miRNA:   3'- -CCGUUAgUgGCGGUgUGG-GGCCGCgg -5'
31649 5' -60 NC_006879.1 + 11490 0.69 0.228662
Target:  5'- gGGUAGUCAgCGCCAUAaugcggUCCaUGGcCGCCg -3'
miRNA:   3'- -CCGUUAGUgGCGGUGU------GGG-GCC-GCGG- -5'
31649 5' -60 NC_006879.1 + 8766 0.69 0.221018
Target:  5'- cGGCGAccgugucgcgcaccUC-CUGCUcgaaaGCGCCCCgaGGCGCCu -3'
miRNA:   3'- -CCGUU--------------AGuGGCGG-----UGUGGGG--CCGCGG- -5'
31649 5' -60 NC_006879.1 + 34283 0.7 0.185011
Target:  5'- cGCccuUCGcCCGCC-CGCCCUcGCGCCa -3'
miRNA:   3'- cCGuu-AGU-GGCGGuGUGGGGcCGCGG- -5'
31649 5' -60 NC_006879.1 + 10086 0.71 0.16161
Target:  5'- gGGUucccCGCCGCCGCACCCUuGCGaCUu -3'
miRNA:   3'- -CCGuua-GUGGCGGUGUGGGGcCGC-GG- -5'
31649 5' -60 NC_006879.1 + 23534 0.71 0.157262
Target:  5'- cGUAGUC-CCGCCGCGCCUCgccuugcaaGGUGCa -3'
miRNA:   3'- cCGUUAGuGGCGGUGUGGGG---------CCGCGg -5'
31649 5' -60 NC_006879.1 + 22272 0.72 0.137072
Target:  5'- aGGCGAcacccgCGCCGCCGCcauCCCCGGagauuGUCu -3'
miRNA:   3'- -CCGUUa-----GUGGCGGUGu--GGGGCCg----CGG- -5'
31649 5' -60 NC_006879.1 + 17182 0.72 0.13333
Target:  5'- cGCcgcCACCGCCGCcCCCCacGCGCCc -3'
miRNA:   3'- cCGuuaGUGGCGGUGuGGGGc-CGCGG- -5'
31649 5' -60 NC_006879.1 + 16182 0.73 0.119288
Target:  5'- gGGCGAUa--CGUCACuCCCCGGUaGCCg -3'
miRNA:   3'- -CCGUUAgugGCGGUGuGGGGCCG-CGG- -5'
31649 5' -60 NC_006879.1 + 16445 0.75 0.083576
Target:  5'- -aUAAUCGCCGCCGCcaucggugccauaCCCGGCGUCg -3'
miRNA:   3'- ccGUUAGUGGCGGUGug-----------GGGCCGCGG- -5'
31649 5' -60 NC_006879.1 + 137 0.76 0.071615
Target:  5'- cGCGucaccccacGUCACCGCaCGuCACCCCGGCcccGCCu -3'
miRNA:   3'- cCGU---------UAGUGGCG-GU-GUGGGGCCG---CGG- -5'
31649 5' -60 NC_006879.1 + 34314 0.76 0.071615
Target:  5'- cGCGucaccccacGUCACCGCaCGuCACCCCGGCcccGCCu -3'
miRNA:   3'- cCGU---------UAGUGGCG-GU-GUGGGGCCG---CGG- -5'
31649 5' -60 NC_006879.1 + 8123 0.76 0.067617
Target:  5'- cGGCGcagaGCCGCCucuACcCCCCGGCGCUc -3'
miRNA:   3'- -CCGUuag-UGGCGG---UGuGGGGCCGCGG- -5'
31649 5' -60 NC_006879.1 + 20208 0.79 0.043796
Target:  5'- cGCAucCACCaGCCGCACCgCGGCGUCa -3'
miRNA:   3'- cCGUuaGUGG-CGGUGUGGgGCCGCGG- -5'
31649 5' -60 NC_006879.1 + 25413 1.14 0.000086
Target:  5'- cGGCAAUCACCGCCACACCCCGGCGCCa -3'
miRNA:   3'- -CCGUUAGUGGCGGUGUGGGGCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.