miRNA display CGI


Results 41 - 54 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31658 3' -57.8 NC_006883.1 + 22049 0.71 0.737693
Target:  5'- ----gACCAgUUGGACCUGuAGGACCg -3'
miRNA:   3'- agaggUGGUgAGCCUGGACcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 23342 0.71 0.737693
Target:  5'- ----gACCAgUUGGACCUGGAGaACCa -3'
miRNA:   3'- agaggUGGUgAGCCUGGACCUCcUGG- -5'
31658 3' -57.8 NC_006883.1 + 26637 0.76 0.455044
Target:  5'- gUUCCACCugUgGGACCaGcAGGACCa -3'
miRNA:   3'- aGAGGUGGugAgCCUGGaCcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 22084 0.76 0.463806
Target:  5'- aCUUgGaCCAggaGGACCUGGAGGACCa -3'
miRNA:   3'- aGAGgU-GGUgagCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 23445 0.75 0.481588
Target:  5'- gUUCCugUAUUaccUGGACCUGGuGGACCu -3'
miRNA:   3'- aGAGGugGUGA---GCCUGGACCuCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 26724 0.75 0.503352
Target:  5'- gCUCCAUCAUUuccaggaggaccugcUGGACCUGGAGuACCa -3'
miRNA:   3'- aGAGGUGGUGA---------------GCCUGGACCUCcUGG- -5'
31658 3' -57.8 NC_006883.1 + 28372 0.74 0.536763
Target:  5'- gUCagCACCAggaGGuCCUGGAGGACCa -3'
miRNA:   3'- -AGagGUGGUgagCCuGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 26571 0.74 0.549966
Target:  5'- gCUCCAUCAUUuccaggaggaccugcUGGACCUGuAGGACCu -3'
miRNA:   3'- aGAGGUGGUGA---------------GCCUGGACcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 28494 0.74 0.565176
Target:  5'- gUUCCACC---UGGACCaGGAGGACCn -3'
miRNA:   3'- aGAGGUGGugaGCCUGGaCCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 28563 0.73 0.593967
Target:  5'- gUUCCugg---UGGACCUGGAGGACCa -3'
miRNA:   3'- aGAGGuggugaGCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 28539 0.73 0.622982
Target:  5'- cUUCCACCugaaGGACCUGuuGGACCa -3'
miRNA:   3'- aGAGGUGGugagCCUGGACcuCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 23402 0.71 0.690577
Target:  5'- -gUCCaguuggACCugUgGGACCUGuGGGACCa -3'
miRNA:   3'- agAGG------UGGugAgCCUGGACcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 26777 0.71 0.737693
Target:  5'- ----gACCAgUUGGACCUGcAGGACCa -3'
miRNA:   3'- agaggUGGUgAGCCUGGACcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 28152 0.66 0.943494
Target:  5'- gUUCCACCugaaGGACCaguUGGAccaguuGGACCu -3'
miRNA:   3'- aGAGGUGGugagCCUGG---ACCU------CCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.