miRNA display CGI


Results 41 - 60 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31659 3' -59.6 NC_006883.1 + 28513 0.66 0.863748
Target:  5'- -aGuuGGACCAGUcGGACCAGuuCCAc -3'
miRNA:   3'- gaCcuCCUGGUCGuCCUGGUCcuGGU- -5'
31659 3' -59.6 NC_006883.1 + 23382 0.74 0.423857
Target:  5'- cCUGuGGGACCAGUuggaccuggauuugaAGGACCuacAGGACCAg -3'
miRNA:   3'- -GACcUCCUGGUCG---------------UCCUGG---UCCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 28146 0.75 0.387887
Target:  5'- cCUGaAGGACCAGUuGGACCAguuGGACCu -3'
miRNA:   3'- -GACcUCCUGGUCGuCCUGGU---CCUGGu -5'
31659 3' -59.6 NC_006883.1 + 22095 0.75 0.379996
Target:  5'- cCUGGAGGACCAcUuGGACCAGGAg-- -3'
miRNA:   3'- -GACCUCCUGGUcGuCCUGGUCCUggu -5'
31659 3' -59.6 NC_006883.1 + 222920 0.77 0.28117
Target:  5'- -aGuAGGACCAGCAGGACCAGuaguACCAg -3'
miRNA:   3'- gaCcUCCUGGUCGUCCUGGUCc---UGGU- -5'
31659 3' -59.6 NC_006883.1 + 160570 0.77 0.287501
Target:  5'- gUGGAGGuCCAGCAGcaaGAUCAGGACUc -3'
miRNA:   3'- gACCUCCuGGUCGUC---CUGGUCCUGGu -5'
31659 3' -59.6 NC_006883.1 + 23427 0.77 0.287501
Target:  5'- cCUGGuGGACCuGUAGGACCAucugguccaguuGGACCu -3'
miRNA:   3'- -GACCuCCUGGuCGUCCUGGU------------CCUGGu -5'
31659 3' -59.6 NC_006883.1 + 28551 0.77 0.305821
Target:  5'- cCUGGAGGACCAcuuccaccugaAGGACCuguuGGACCAg -3'
miRNA:   3'- -GACCUCCUGGUcg---------UCCUGGu---CCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 28480 0.76 0.313942
Target:  5'- -aGGAGGACCaucuccaccAGUAGGACCuggagguccuggAGGACCAc -3'
miRNA:   3'- gaCCUCCUGG---------UCGUCCUGG------------UCCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 22240 0.76 0.342184
Target:  5'- -aGcAGGACCAGgAGGACCAcuuGGACCAu -3'
miRNA:   3'- gaCcUCCUGGUCgUCCUGGU---CCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 23200 0.75 0.356977
Target:  5'- -aGGAGGACCAcuuGGACCaucAGGACCAg -3'
miRNA:   3'- gaCCUCCUGGUcguCCUGG---UCCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 27493 0.75 0.356977
Target:  5'- cCUGcuGGACCuGUAGGACCAGGAgCAc -3'
miRNA:   3'- -GACcuCCUGGuCGUCCUGGUCCUgGU- -5'
31659 3' -59.6 NC_006883.1 + 26818 0.75 0.356977
Target:  5'- uUGG-GGACCAGCAGGACCAGu---- -3'
miRNA:   3'- gACCuCCUGGUCGUCCUGGUCcuggu -5'
31659 3' -59.6 NC_006883.1 + 26710 0.75 0.36454
Target:  5'- -aGGAGGACCuGCuGGACCuGGAguaCCAg -3'
miRNA:   3'- gaCCUCCUGGuCGuCCUGGuCCU---GGU- -5'
31659 3' -59.6 NC_006883.1 + 27304 0.69 0.681443
Target:  5'- gUGGcacAGGuCCAGCAGGuccuCCAGGuCCu -3'
miRNA:   3'- gACC---UCCuGGUCGUCCu---GGUCCuGGu -5'
31659 3' -59.6 NC_006883.1 + 23441 0.68 0.765737
Target:  5'- uCUGGu---CCAGCAGGuccuCCAGGuCCAg -3'
miRNA:   3'- -GACCuccuGGUCGUCCu---GGUCCuGGU- -5'
31659 3' -59.6 NC_006883.1 + 27219 0.67 0.8256
Target:  5'- cCUGGuccuacAGGuCCAGCAGGuccuaCAGGuCCAu -3'
miRNA:   3'- -GACC------UCCuGGUCGUCCug---GUCCuGGU- -5'
31659 3' -59.6 NC_006883.1 + 22607 0.66 0.849016
Target:  5'- uCUGGuacaacuGGAUCuGguGGAUCAGGugUAa -3'
miRNA:   3'- -GACCu------CCUGGuCguCCUGGUCCugGU- -5'
31659 3' -59.6 NC_006883.1 + 208989 0.66 0.870834
Target:  5'- -cGGuAGGGauuaCAGCAGGuucACUGGGACUAa -3'
miRNA:   3'- gaCC-UCCUg---GUCGUCC---UGGUCCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 27372 0.7 0.642686
Target:  5'- aCUGGuacuccAGGuCCAGCAGGuccuCCAGGuCCu -3'
miRNA:   3'- -GACC------UCCuGGUCGUCCu---GGUCCuGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.