miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31659 5' -56.6 NC_006883.1 + 27503 0.76 0.504965
Target:  5'- aCCUGuAGGACCugcuggACCugUAGGACCaGGa -3'
miRNA:   3'- -GGACcUCCUGG------UGGugAUCCUGGaCC- -5'
31659 5' -56.6 NC_006883.1 + 28093 0.76 0.495786
Target:  5'- aCCUGGAGGACCA--GC-AGGACCUa- -3'
miRNA:   3'- -GGACCUCCUGGUggUGaUCCUGGAcc -5'
31659 5' -56.6 NC_006883.1 + 27746 0.77 0.442431
Target:  5'- aCCUGuGGGACCAguugguCCugUGGGACCUGu -3'
miRNA:   3'- -GGACcUCCUGGU------GGugAUCCUGGACc -5'
31659 5' -56.6 NC_006883.1 + 22234 0.79 0.353744
Target:  5'- aCCaGGAGGACCACUuggaccauCU-GGACCUGGa -3'
miRNA:   3'- -GGaCCUCCUGGUGGu-------GAuCCUGGACC- -5'
31659 5' -56.6 NC_006883.1 + 26695 0.79 0.353744
Target:  5'- aCCUGGAGuaccaguuCCACCACcuGGACCUGGa -3'
miRNA:   3'- -GGACCUCcu------GGUGGUGauCCUGGACC- -5'
31659 5' -56.6 NC_006883.1 + 24972 0.8 0.32476
Target:  5'- aCUUGGAccugauGGACCacuuggACCugUAGGACCUGGa -3'
miRNA:   3'- -GGACCU------CCUGG------UGGugAUCCUGGACC- -5'
31659 5' -56.6 NC_006883.1 + 223061 0.81 0.304205
Target:  5'- aCCUGGAGGACCaacaggACCACcagaaggaccagUAGGACCaGGa -3'
miRNA:   3'- -GGACCUCCUGG------UGGUG------------AUCCUGGaCC- -5'
31659 5' -56.6 NC_006883.1 + 26560 0.81 0.291065
Target:  5'- uCCaGGAGGACCugcuggACCugUAGGACCUGc -3'
miRNA:   3'- -GGaCCUCCUGG------UGGugAUCCUGGACc -5'
31659 5' -56.6 NC_006883.1 + 27584 0.81 0.284664
Target:  5'- aCCUGGAGGACCugCu---GGACCUGu -3'
miRNA:   3'- -GGACCUCCUGGugGugauCCUGGACc -5'
31659 5' -56.6 NC_006883.1 + 28447 0.82 0.262541
Target:  5'- uCCUGGAGGACCacuuccuccaucagaACCAUcagaaccuggAGGACCUGGa -3'
miRNA:   3'- -GGACCUCCUGG---------------UGGUGa---------UCCUGGACC- -5'
31659 5' -56.6 NC_006883.1 + 28255 0.83 0.232003
Target:  5'- aCCUGGAGGACCaucuccACCAgUAGGACCa-- -3'
miRNA:   3'- -GGACCUCCUGG------UGGUgAUCCUGGacc -5'
31659 5' -56.6 NC_006883.1 + 23716 0.84 0.187791
Target:  5'- aCCUGGAGGACCugcuggACCAgauGGACCUGGa -3'
miRNA:   3'- -GGACCUCCUGG------UGGUgauCCUGGACC- -5'
31659 5' -56.6 NC_006883.1 + 21770 0.85 0.176474
Target:  5'- aCCUGGAGGACCAgaaggaccaguuauuCCAgUuGGACCUGGa -3'
miRNA:   3'- -GGACCUCCUGGU---------------GGUgAuCCUGGACC- -5'
31659 5' -56.6 NC_006883.1 + 28552 0.85 0.16657
Target:  5'- aCCUGGAGGACCAcuuCCACcugaAGGACCUGu -3'
miRNA:   3'- -GGACCUCCUGGU---GGUGa---UCCUGGACc -5'
31659 5' -56.6 NC_006883.1 + 28357 0.85 0.162592
Target:  5'- uCCUGGAGGACCAgcaggaccaguuCCGCcuGGACCUGGa -3'
miRNA:   3'- -GGACCUCCUGGU------------GGUGauCCUGGACC- -5'
31659 5' -56.6 NC_006883.1 + 28315 0.86 0.147525
Target:  5'- aCCUGGAGGACCAUCAUcaccagUAGGACCaguUGGa -3'
miRNA:   3'- -GGACCUCCUGGUGGUG------AUCCUGG---ACC- -5'
31659 5' -56.6 NC_006883.1 + 28483 0.86 0.140478
Target:  5'- aCCaGGAGGACCaucuccACCAgUAGGACCUGGa -3'
miRNA:   3'- -GGaCCUCCUGG------UGGUgAUCCUGGACC- -5'
31659 5' -56.6 NC_006883.1 + 27656 0.87 0.124191
Target:  5'- aCCUGGAGGACCugCu---GGACCUGGa -3'
miRNA:   3'- -GGACCUCCUGGugGugauCCUGGACC- -5'
31659 5' -56.6 NC_006883.1 + 21889 0.88 0.112441
Target:  5'- aCCUGGAGGACCACCAgcAGGACCagaGGa -3'
miRNA:   3'- -GGACCUCCUGGUGGUgaUCCUGGa--CC- -5'
31659 5' -56.6 NC_006883.1 + 27539 0.91 0.073227
Target:  5'- aCCUGGAGGACCaucuccACCugUAGGACCUGa -3'
miRNA:   3'- -GGACCUCCUGG------UGGugAUCCUGGACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.