miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3166 5' -52 NC_001500.1 + 1353 0.68 0.184316
Target:  5'- aGGAUGGGAGCGGUUg---GaGAGGGGg -3'
miRNA:   3'- -UCUACUCUCGUCGAaggaCgUUCUCC- -5'
3166 5' -52 NC_001500.1 + 4328 0.68 0.161393
Target:  5'- --uUGAGAGCGGUggggguggUCa-GCAGGAGGu -3'
miRNA:   3'- ucuACUCUCGUCGa-------AGgaCGUUCUCC- -5'
3166 5' -52 NC_001500.1 + 5235 0.7 0.112608
Target:  5'- aAGGUGGGgcAGUcccagggaccauagaGGCUgcgCCUGUAGGAGGa -3'
miRNA:   3'- -UCUACUC--UCG---------------UCGAa--GGACGUUCUCC- -5'
3166 5' -52 NC_001500.1 + 3604 1.12 0.000044
Target:  5'- cAGAUGAGAGCAGCUUCCUGCAAGAGGg -3'
miRNA:   3'- -UCUACUCUCGUCGAAGGACGUUCUCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.