miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31660 3' -57.1 NC_006883.1 + 23398 1.12 0.002527
Target:  5'- aGUUGGACCUGUGGGACCUGUGGGACCa -3'
miRNA:   3'- -CAACCUGGACACCCUGGACACCCUGG- -5'
31660 3' -57.1 NC_006883.1 + 27752 0.99 0.018038
Target:  5'- aGUUGGACCUGUGGGACCaguugguccUGUGGGACCu -3'
miRNA:   3'- -CAACCUGGACACCCUGG---------ACACCCUGG- -5'
31660 3' -57.1 NC_006883.1 + 23922 0.83 0.190716
Target:  5'- aGUUGGACCUGUaGGACCUGcuGGACCu -3'
miRNA:   3'- -CAACCUGGACAcCCUGGACacCCUGG- -5'
31660 3' -57.1 NC_006883.1 + 28126 0.82 0.225105
Target:  5'- aGUUGGACCUGUaGGuCCUGUaGGACCa -3'
miRNA:   3'- -CAACCUGGACAcCCuGGACAcCCUGG- -5'
31660 3' -57.1 NC_006883.1 + 25017 0.82 0.230427
Target:  5'- uGUUGGACCUG-GaGGACCUG-GaGGACCg -3'
miRNA:   3'- -CAACCUGGACaC-CCUGGACaC-CCUGG- -5'
31660 3' -57.1 NC_006883.1 + 23432 0.81 0.235855
Target:  5'- -cUGGACCUG-GuGGACCUGUaGGACCa -3'
miRNA:   3'- caACCUGGACaC-CCUGGACAcCCUGG- -5'
31660 3' -57.1 NC_006883.1 + 26546 0.8 0.296155
Target:  5'- -cUGGACCUGUaGGACCUGcuGGACCa -3'
miRNA:   3'- caACCUGGACAcCCUGGACacCCUGG- -5'
31660 3' -57.1 NC_006883.1 + 27507 0.79 0.316442
Target:  5'- -aUGGACCUGUaGGACCUGcuGGACCu -3'
miRNA:   3'- caACCUGGACAcCCUGGACacCCUGG- -5'
31660 3' -57.1 NC_006883.1 + 26647 0.79 0.33776
Target:  5'- aGUUGGACCaGUuccACCUGUGGGACCa -3'
miRNA:   3'- -CAACCUGGaCAcccUGGACACCCUGG- -5'
31660 3' -57.1 NC_006883.1 + 28328 0.78 0.375563
Target:  5'- -cUGGACCUG-GaGGACCUG-GaGGACCa -3'
miRNA:   3'- caACCUGGACaC-CCUGGACaC-CCUGG- -5'
31660 3' -57.1 NC_006883.1 + 22045 0.76 0.441709
Target:  5'- aGUUGGACCUGUaGGACCgucuGGACCc -3'
miRNA:   3'- -CAACCUGGACAcCCUGGacacCCUGG- -5'
31660 3' -57.1 NC_006883.1 + 24971 0.76 0.459252
Target:  5'- cUUGGACCUGaUGgaccacuuGGACCUGUaGGACCu -3'
miRNA:   3'- cAACCUGGAC-AC--------CCUGGACAcCCUGG- -5'
31660 3' -57.1 NC_006883.1 + 23720 0.76 0.459252
Target:  5'- -cUGGACCUG-GaGGACCUGcuGGACCa -3'
miRNA:   3'- caACCUGGACaC-CCUGGACacCCUGG- -5'
31660 3' -57.1 NC_006883.1 + 21937 0.75 0.504647
Target:  5'- --aGGACCaGUuGGACCUGUuGGACCa -3'
miRNA:   3'- caaCCUGGaCAcCCUGGACAcCCUGG- -5'
31660 3' -57.1 NC_006883.1 + 28528 0.75 0.504647
Target:  5'- --aGGACCUGUuGGACCaGUuGGACCa -3'
miRNA:   3'- caaCCUGGACAcCCUGGaCAcCCUGG- -5'
31660 3' -57.1 NC_006883.1 + 27578 0.75 0.513961
Target:  5'- --aGGACCUGcuGGACCUGUGccaccaccuGGACCa -3'
miRNA:   3'- caaCCUGGACacCCUGGACAC---------CCUGG- -5'
31660 3' -57.1 NC_006883.1 + 28268 0.73 0.600342
Target:  5'- -cUGGACCaGUuGGACCUG-GaGGACCa -3'
miRNA:   3'- caACCUGGaCAcCCUGGACaC-CCUGG- -5'
31660 3' -57.1 NC_006883.1 + 27659 0.73 0.610126
Target:  5'- --aGGACCUG-GaGGACCUGcuGGACCu -3'
miRNA:   3'- caaCCUGGACaC-CCUGGACacCCUGG- -5'
31660 3' -57.1 NC_006883.1 + 21740 0.73 0.649344
Target:  5'- aGUUGGACCUG-GaGGACCaGcaGGACCa -3'
miRNA:   3'- -CAACCUGGACaC-CCUGGaCacCCUGG- -5'
31660 3' -57.1 NC_006883.1 + 26800 0.73 0.649344
Target:  5'- aGUUGGACCUG-GuGGACCaGcaGGACCa -3'
miRNA:   3'- -CAACCUGGACaC-CCUGGaCacCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.