miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31660 3' -57.1 NC_006883.1 + 26647 0.79 0.33776
Target:  5'- aGUUGGACCaGUuccACCUGUGGGACCa -3'
miRNA:   3'- -CAACCUGGaCAcccUGGACACCCUGG- -5'
31660 3' -57.1 NC_006883.1 + 26672 0.66 0.944235
Target:  5'- -cUGGACCUG-GaGGACC-GUcuGGACCn -3'
miRNA:   3'- caACCUGGACaC-CCUGGaCAc-CCUGG- -5'
31660 3' -57.1 NC_006883.1 + 26773 0.68 0.890408
Target:  5'- aGUUGGACCUGcaGGACCaGUugcaccagcaGGACCa -3'
miRNA:   3'- -CAACCUGGACacCCUGGaCAc---------CCUGG- -5'
31660 3' -57.1 NC_006883.1 + 26800 0.73 0.649344
Target:  5'- aGUUGGACCUG-GuGGACCaGcaGGACCa -3'
miRNA:   3'- -CAACCUGGACaC-CCUGGaCacCCUGG- -5'
31660 3' -57.1 NC_006883.1 + 27507 0.79 0.316442
Target:  5'- -aUGGACCUGUaGGACCUGcuGGACCu -3'
miRNA:   3'- caACCUGGACAcCCUGGACacCCUGG- -5'
31660 3' -57.1 NC_006883.1 + 27543 0.69 0.855579
Target:  5'- -cUGGACCUG-GaGGACCaucuccaccUGUaGGACCu -3'
miRNA:   3'- caACCUGGACaC-CCUGG---------ACAcCCUGG- -5'
31660 3' -57.1 NC_006883.1 + 27578 0.75 0.513961
Target:  5'- --aGGACCUGcuGGACCUGUGccaccaccuGGACCa -3'
miRNA:   3'- caaCCUGGACacCCUGGACAC---------CCUGG- -5'
31660 3' -57.1 NC_006883.1 + 27659 0.73 0.610126
Target:  5'- --aGGACCUG-GaGGACCUGcuGGACCu -3'
miRNA:   3'- caaCCUGGACaC-CCUGGACacCCUGG- -5'
31660 3' -57.1 NC_006883.1 + 27752 0.99 0.018038
Target:  5'- aGUUGGACCUGUGGGACCaguugguccUGUGGGACCu -3'
miRNA:   3'- -CAACCUGGACACCCUGG---------ACACCCUGG- -5'
31660 3' -57.1 NC_006883.1 + 28099 0.72 0.698023
Target:  5'- aGUUGGACCUG-GaGGACCaGcaGGACCu -3'
miRNA:   3'- -CAACCUGGACaC-CCUGGaCacCCUGG- -5'
31660 3' -57.1 NC_006883.1 + 28126 0.82 0.225105
Target:  5'- aGUUGGACCUGUaGGuCCUGUaGGACCa -3'
miRNA:   3'- -CAACCUGGACAcCCuGGACAcCCUGG- -5'
31660 3' -57.1 NC_006883.1 + 28268 0.73 0.600342
Target:  5'- -cUGGACCaGUuGGACCUG-GaGGACCa -3'
miRNA:   3'- caACCUGGaCAcCCUGGACaC-CCUGG- -5'
31660 3' -57.1 NC_006883.1 + 28328 0.78 0.375563
Target:  5'- -cUGGACCUG-GaGGACCUG-GaGGACCa -3'
miRNA:   3'- caACCUGGACaC-CCUGGACaC-CCUGG- -5'
31660 3' -57.1 NC_006883.1 + 28459 0.68 0.862936
Target:  5'- --aGGACCUG-GaGGuCCUG-GaGGACCa -3'
miRNA:   3'- caaCCUGGACaC-CCuGGACaC-CCUGG- -5'
31660 3' -57.1 NC_006883.1 + 28528 0.75 0.504647
Target:  5'- --aGGACCUGUuGGACCaGUuGGACCa -3'
miRNA:   3'- caaCCUGGACAcCCUGGaCAcCCUGG- -5'
31660 3' -57.1 NC_006883.1 + 223073 0.68 0.883843
Target:  5'- --aGGACCaG-GaGGACCUG-GaGGACCa -3'
miRNA:   3'- caaCCUGGaCaC-CCUGGACaC-CCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.