Results 41 - 48 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31661 | 3' | -57.8 | NC_006883.1 | + | 28273 | 0.68 | 0.821409 |
Target: 5'- -uCCGCCuggACCAGuuggaCCuGGAGGACCa -3' miRNA: 3'- guGGUGG---UGGUCua---GGuCCUCCUGGa -5' |
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31661 | 3' | -57.8 | NC_006883.1 | + | 112589 | 0.68 | 0.840653 |
Target: 5'- gUAgCACCACCAGAUCCaccaguaccaccaucAGcuGGACCg -3' miRNA: 3'- -GUgGUGGUGGUCUAGG---------------UCcuCCUGGa -5' |
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31661 | 3' | -57.8 | NC_006883.1 | + | 89129 | 0.68 | 0.84531 |
Target: 5'- cCACCACCACCAGAUCCAa-------- -3' miRNA: 3'- -GUGGUGGUGGUCUAGGUccuccugga -5' |
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31661 | 3' | -57.8 | NC_006883.1 | + | 21959 | 0.67 | 0.860363 |
Target: 5'- gACCAggagauCCAGuaCCAGGAGGACCa -3' miRNA: 3'- gUGGUggu---GGUCuaGGUCCUCCUGGa -5' |
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31661 | 3' | -57.8 | NC_006883.1 | + | 208940 | 0.67 | 0.858152 |
Target: 5'- uCACUACCACCAGGcUCUAGGGauuuaguagaguuuGGAUUUu -3' miRNA: 3'- -GUGGUGGUGGUCU-AGGUCCU--------------CCUGGA- -5' |
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31661 | 3' | -57.8 | NC_006883.1 | + | 184512 | 0.66 | 0.918203 |
Target: 5'- aUAUCAUgGuCUuGAaCCAGGAGGACCUg -3' miRNA: 3'- -GUGGUGgU-GGuCUaGGUCCUCCUGGA- -5' |
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31661 | 3' | -57.8 | NC_006883.1 | + | 187710 | 0.66 | 0.912056 |
Target: 5'- aCACCACCACCA----UAGGuguuaguuauguaAGGACCUu -3' miRNA: 3'- -GUGGUGGUGGUcuagGUCC-------------UCCUGGA- -5' |
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31661 | 3' | -57.8 | NC_006883.1 | + | 23148 | 0.67 | 0.88419 |
Target: 5'- gACCAgaugguccuacagguCCACCAGGUCCAGGuaauacAGGAa-- -3' miRNA: 3'- gUGGU---------------GGUGGUCUAGGUCC------UCCUgga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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