Results 61 - 65 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
31662 | 3' | -50.9 | NC_006883.1 | + | 28180 | 0.98 | 0.072845 |
Target: 5'- gUCAGcACCAGCAGGACCAGUUGGACCa -3' miRNA: 3'- -GGUUaUGGUCGUCUUGGUCAGCCUGG- -5' |
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31662 | 3' | -50.9 | NC_006883.1 | + | 22020 | 0.99 | 0.070934 |
Target: 5'- cCCGuaggACCAGCAGGACCAGUUGGACCa -3' miRNA: 3'- -GGUua--UGGUCGUCUUGGUCAGCCUGG- -5' |
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31662 | 3' | -50.9 | NC_006883.1 | + | 21949 | 1 | 0.054303 |
Target: 5'- uCCAGUACCAGgAGGACCAGUUGGACCu -3' miRNA: 3'- -GGUUAUGGUCgUCUUGGUCAGCCUGG- -5' |
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31662 | 3' | -50.9 | NC_006883.1 | + | 28237 | 1.06 | 0.024103 |
Target: 5'- aCCAGUaggACCAGCAGGACCAGUCGGACCa -3' miRNA: 3'- -GGUUA---UGGUCGUCUUGGUCAGCCUGG- -5' |
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31662 | 3' | -50.9 | NC_006883.1 | + | 23958 | 1.15 | 0.006833 |
Target: 5'- uCCAAUACCAGCAGAACCAGUCGGACCa -3' miRNA: 3'- -GGUUAUGGUCGUCUUGGUCAGCCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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