Results 61 - 65 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
31662 | 3' | -50.9 | NC_006883.1 | + | 28426 | 0.67 | 0.998387 |
Target: 5'- aUCAGaACCAuCAGAACCuggaGGACCu -3' miRNA: 3'- -GGUUaUGGUcGUCUUGGucagCCUGG- -5' |
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31662 | 3' | -50.9 | NC_006883.1 | + | 25002 | 0.67 | 0.998387 |
Target: 5'- aCCuggaggACCGcUAGGACCAcUUGGACCa -3' miRNA: 3'- -GGuua---UGGUcGUCUUGGUcAGCCUGG- -5' |
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31662 | 3' | -50.9 | NC_006883.1 | + | 79969 | 0.66 | 0.99888 |
Target: 5'- uUCAG-AUUAGCAGAugCAGguaUCGGAaCCc -3' miRNA: 3'- -GGUUaUGGUCGUCUugGUC---AGCCU-GG- -5' |
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31662 | 3' | -50.9 | NC_006883.1 | + | 22755 | 0.66 | 0.999238 |
Target: 5'- gCAcUAUCAGCAGAACCacuaacauuagcAGUUGcACCc -3' miRNA: 3'- gGUuAUGGUCGUCUUGG------------UCAGCcUGG- -5' |
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31662 | 3' | -50.9 | NC_006883.1 | + | 16182 | 0.66 | 0.999377 |
Target: 5'- -uGGUGCUGGUGGGACUGGUaaacuUGGACUg -3' miRNA: 3'- ggUUAUGGUCGUCUUGGUCA-----GCCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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