Results 41 - 60 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31662 | 3' | -50.9 | NC_006883.1 | + | 21985 | 0.67 | 0.996841 |
Target: 5'- uCCAcuuggACCAGgAGGACCuG-CaGGACCa -3' miRNA: 3'- -GGUua---UGGUCgUCUUGGuCaG-CCUGG- -5' |
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31662 | 3' | -50.9 | NC_006883.1 | + | 41673 | 0.67 | 0.997267 |
Target: 5'- gCAAcACCAGCAGGGuuuuccuuCCAGUUuauuugaGGACUa -3' miRNA: 3'- gGUUaUGGUCGUCUU--------GGUCAG-------CCUGG- -5' |
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31662 | 3' | -50.9 | NC_006883.1 | + | 27665 | 0.67 | 0.997722 |
Target: 5'- uCCAGgaggACCuGgAGGACCuGcUGGACCu -3' miRNA: 3'- -GGUUa---UGGuCgUCUUGGuCaGCCUGG- -5' |
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31662 | 3' | -50.9 | NC_006883.1 | + | 27593 | 0.67 | 0.997722 |
Target: 5'- uCCAGgaggACCuGgAGGACCuGcUGGACCu -3' miRNA: 3'- -GGUUa---UGGuCgUCUUGGuCaGCCUGG- -5' |
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31662 | 3' | -50.9 | NC_006883.1 | + | 25002 | 0.67 | 0.998387 |
Target: 5'- aCCuggaggACCGcUAGGACCAcUUGGACCa -3' miRNA: 3'- -GGuua---UGGUcGUCUUGGUcAGCCUGG- -5' |
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31662 | 3' | -50.9 | NC_006883.1 | + | 28426 | 0.67 | 0.998387 |
Target: 5'- aUCAGaACCAuCAGAACCuggaGGACCu -3' miRNA: 3'- -GGUUaUGGUcGUCUUGGucagCCUGG- -5' |
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31662 | 3' | -50.9 | NC_006883.1 | + | 23434 | 0.69 | 0.990118 |
Target: 5'- aCCuggACCuGguGGACCuGUaGGACCa -3' miRNA: 3'- -GGuuaUGGuCguCUUGGuCAgCCUGG- -5' |
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31662 | 3' | -50.9 | NC_006883.1 | + | 112593 | 0.7 | 0.985739 |
Target: 5'- aCCAGUagcACCAcCAGAuccACCAGUaccaccaucagcUGGACCg -3' miRNA: 3'- -GGUUA---UGGUcGUCU---UGGUCA------------GCCUGG- -5' |
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31662 | 3' | -50.9 | NC_006883.1 | + | 27494 | 0.74 | 0.913494 |
Target: 5'- aCCugcuggACCuGUAGGACCAGgagcaccuugCGGACCa -3' miRNA: 3'- -GGuua---UGGuCGUCUUGGUCa---------GCCUGG- -5' |
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31662 | 3' | -50.9 | NC_006883.1 | + | 23925 | 0.73 | 0.929967 |
Target: 5'- aCCAGUuggACCuGUAGGACCuGcUGGACCu -3' miRNA: 3'- -GGUUA---UGGuCGUCUUGGuCaGCCUGG- -5' |
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31662 | 3' | -50.9 | NC_006883.1 | + | 26988 | 0.72 | 0.944327 |
Target: 5'- aCCAGgaggACCuGgAGAACCAG-CaGGACCu -3' miRNA: 3'- -GGUUa---UGGuCgUCUUGGUCaG-CCUGG- -5' |
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31662 | 3' | -50.9 | NC_006883.1 | + | 230529 | 0.72 | 0.95661 |
Target: 5'- gUAAU-CUAGCAGAACCAGU-GGugUa -3' miRNA: 3'- gGUUAuGGUCGUCUUGGUCAgCCugG- -5' |
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31662 | 3' | -50.9 | NC_006883.1 | + | 23689 | 0.72 | 0.960257 |
Target: 5'- aCCuggaggACCAGCAGGACCAGguccACCa -3' miRNA: 3'- -GGuua---UGGUCGUCUUGGUCagccUGG- -5' |
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31662 | 3' | -50.9 | NC_006883.1 | + | 209984 | 0.71 | 0.966903 |
Target: 5'- uCCAAUACCAGCAGGAUUuucuaGGUa-GACUu -3' miRNA: 3'- -GGUUAUGGUCGUCUUGG-----UCAgcCUGG- -5' |
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31662 | 3' | -50.9 | NC_006883.1 | + | 23740 | 0.71 | 0.969914 |
Target: 5'- aCCAGauCCAGgAGGACCuGcUGGACCu -3' miRNA: 3'- -GGUUauGGUCgUCUUGGuCaGCCUGG- -5' |
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31662 | 3' | -50.9 | NC_006883.1 | + | 41754 | 0.71 | 0.969914 |
Target: 5'- aCAGUACCuuCAGAACCAagaGGACUa -3' miRNA: 3'- gGUUAUGGucGUCUUGGUcagCCUGG- -5' |
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31662 | 3' | -50.9 | NC_006883.1 | + | 25386 | 0.71 | 0.975338 |
Target: 5'- uUCAGUAUCAGCAGcaguaauucuauAAUUcugAGUUGGACCg -3' miRNA: 3'- -GGUUAUGGUCGUC------------UUGG---UCAGCCUGG- -5' |
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31662 | 3' | -50.9 | NC_006883.1 | + | 23293 | 0.71 | 0.975338 |
Target: 5'- aCCGAUACCuGgAGGACCuuGa-GGACCa -3' miRNA: 3'- -GGUUAUGGuCgUCUUGGu-CagCCUGG- -5' |
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31662 | 3' | -50.9 | NC_006883.1 | + | 221773 | 0.7 | 0.982084 |
Target: 5'- gCAGUAgCAGCAuuACCAGUCaaaGGuCCa -3' miRNA: 3'- gGUUAUgGUCGUcuUGGUCAG---CCuGG- -5' |
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31662 | 3' | -50.9 | NC_006883.1 | + | 26560 | 0.7 | 0.98399 |
Target: 5'- uCCAGgaggACCuGCuGGACCuGUaGGACCu -3' miRNA: 3'- -GGUUa---UGGuCGuCUUGGuCAgCCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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