Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31663 | 5' | -50.9 | NC_006883.1 | + | 21726 | 0.72 | 0.940527 |
Target: 5'- gACCAGCAGGACCAguaggACcaccaccguUUCCA-CUa -3' miRNA: 3'- gUGGUCGUCCUGGUaa---UG---------AAGGUaGA- -5' |
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31663 | 5' | -50.9 | NC_006883.1 | + | 21807 | 0.8 | 0.58873 |
Target: 5'- gGCCAGCAGGACCAggACcgCCAcCUg -3' miRNA: 3'- gUGGUCGUCCUGGUaaUGaaGGUaGA- -5' |
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31663 | 5' | -50.9 | NC_006883.1 | + | 21879 | 0.75 | 0.808318 |
Target: 5'- cCACCAGCAGGACCAgaggACcagcaggUCCAg-- -3' miRNA: 3'- -GUGGUCGUCCUGGUaa--UGa------AGGUaga -5' |
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31663 | 5' | -50.9 | NC_006883.1 | + | 21968 | 0.7 | 0.970875 |
Target: 5'- gACCuGCAGGACCAggAgaUCCAg-- -3' miRNA: 3'- gUGGuCGUCCUGGUaaUgaAGGUaga -5' |
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31663 | 5' | -50.9 | NC_006883.1 | + | 22013 | 0.72 | 0.939575 |
Target: 5'- gACCAGCAGGACCAguuggaccaggACcUCCAc-- -3' miRNA: 3'- gUGGUCGUCCUGGUaa---------UGaAGGUaga -5' |
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31663 | 5' | -50.9 | NC_006883.1 | + | 22059 | 0.78 | 0.681805 |
Target: 5'- cCACCAGCAGGACCAguuggACcuguaggaCCGUCUg -3' miRNA: 3'- -GUGGUCGUCCUGGUaa---UGaa------GGUAGA- -5' |
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31663 | 5' | -50.9 | NC_006883.1 | + | 22124 | 0.73 | 0.907734 |
Target: 5'- gACCAGCAGGACCAUc---UCCAc-- -3' miRNA: 3'- gUGGUCGUCCUGGUAaugaAGGUaga -5' |
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31663 | 5' | -50.9 | NC_006883.1 | + | 22199 | 0.76 | 0.771399 |
Target: 5'- gACCAGCAGGACCAggACcaCCA-CUa -3' miRNA: 3'- gUGGUCGUCCUGGUaaUGaaGGUaGA- -5' |
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31663 | 5' | -50.9 | NC_006883.1 | + | 22243 | 0.75 | 0.84262 |
Target: 5'- -uCCAGCAGGACCAggaggaccACUUggaCCAUCUg -3' miRNA: 3'- guGGUCGUCCUGGUaa------UGAA---GGUAGA- -5' |
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31663 | 5' | -50.9 | NC_006883.1 | + | 23151 | 0.68 | 0.988093 |
Target: 5'- gCACCAGCAGGACCAguuggaCCu--- -3' miRNA: 3'- -GUGGUCGUCCUGGUaaugaaGGuaga -5' |
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31663 | 5' | -50.9 | NC_006883.1 | + | 23223 | 0.74 | 0.861726 |
Target: 5'- cCACCAGCAGGACCAggAggaccaggaggaccaCUUggaCCAUCa -3' miRNA: 3'- -GUGGUCGUCCUGGUaaU---------------GAA---GGUAGa -5' |
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31663 | 5' | -50.9 | NC_006883.1 | + | 23253 | 0.66 | 0.997999 |
Target: 5'- uCACCAGCAGGACCAg----------- -3' miRNA: 3'- -GUGGUCGUCCUGGUaaugaagguaga -5' |
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31663 | 5' | -50.9 | NC_006883.1 | + | 23324 | 0.66 | 0.997187 |
Target: 5'- aACCAGCAGGACC-UUGaggaCCAg-- -3' miRNA: 3'- gUGGUCGUCCUGGuAAUgaa-GGUaga -5' |
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31663 | 5' | -50.9 | NC_006883.1 | + | 23681 | 0.74 | 0.858624 |
Target: 5'- gACCAGCAGGACCAgg---UCCAc-- -3' miRNA: 3'- gUGGUCGUCCUGGUaaugaAGGUaga -5' |
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31663 | 5' | -50.9 | NC_006883.1 | + | 26624 | 0.81 | 0.517801 |
Target: 5'- gACCAGCAGGACCAguuggaccugUUGCaccaucauUUCCAUCUg -3' miRNA: 3'- gUGGUCGUCCUGGU----------AAUG--------AAGGUAGA- -5' |
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31663 | 5' | -50.9 | NC_006883.1 | + | 26751 | 1.09 | 0.013996 |
Target: 5'- gCACCAGCAGGACCAUUACUUCCAUCUg -3' miRNA: 3'- -GUGGUCGUCCUGGUAAUGAAGGUAGA- -5' |
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31663 | 5' | -50.9 | NC_006883.1 | + | 26786 | 0.68 | 0.992983 |
Target: 5'- gACCAGCAGGACCAguuggACcUgCAg-- -3' miRNA: 3'- gUGGUCGUCCUGGUaa---UGaAgGUaga -5' |
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31663 | 5' | -50.9 | NC_006883.1 | + | 26971 | 0.66 | 0.997999 |
Target: 5'- aACCAGCAGGACCuugugaaACUgauacCCA-CUg -3' miRNA: 3'- gUGGUCGUCCUGGuaa----UGAa----GGUaGA- -5' |
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31663 | 5' | -50.9 | NC_006883.1 | + | 27233 | 0.68 | 0.992983 |
Target: 5'- -uCCAGCAGGuCC--UACaggUCCAUCa -3' miRNA: 3'- guGGUCGUCCuGGuaAUGa--AGGUAGa -5' |
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31663 | 5' | -50.9 | NC_006883.1 | + | 27711 | 0.75 | 0.834319 |
Target: 5'- gACCAGUAGGACCugauccaccAUcAUUUCCAUCa -3' miRNA: 3'- gUGGUCGUCCUGG---------UAaUGAAGGUAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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