miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31663 5' -50.9 NC_006883.1 + 22013 0.72 0.939575
Target:  5'- gACCAGCAGGACCAguuggaccaggACcUCCAc-- -3'
miRNA:   3'- gUGGUCGUCCUGGUaa---------UGaAGGUaga -5'
31663 5' -50.9 NC_006883.1 + 222915 0.72 0.919644
Target:  5'- gACCAGCAGGACCAgUAgUaCCAg-- -3'
miRNA:   3'- gUGGUCGUCCUGGUaAUgAaGGUaga -5'
31663 5' -50.9 NC_006883.1 + 40159 0.73 0.913811
Target:  5'- aCACCAGCAGcACCAUUACcaCCAg-- -3'
miRNA:   3'- -GUGGUCGUCcUGGUAAUGaaGGUaga -5'
31663 5' -50.9 NC_006883.1 + 222952 0.73 0.913811
Target:  5'- cCACCAGCAGGACCAgcaggaCCAg-- -3'
miRNA:   3'- -GUGGUCGUCCUGGUaaugaaGGUaga -5'
31663 5' -50.9 NC_006883.1 + 28299 0.73 0.913811
Target:  5'- uCACCAGUAGGACCAguuggACcagUUCCGcCUg -3'
miRNA:   3'- -GUGGUCGUCCUGGUaa---UG---AAGGUaGA- -5'
31663 5' -50.9 NC_006883.1 + 22124 0.73 0.907734
Target:  5'- gACCAGCAGGACCAUc---UCCAc-- -3'
miRNA:   3'- gUGGUCGUCCUGGUAaugaAGGUaga -5'
31663 5' -50.9 NC_006883.1 + 23223 0.74 0.861726
Target:  5'- cCACCAGCAGGACCAggAggaccaggaggaccaCUUggaCCAUCa -3'
miRNA:   3'- -GUGGUCGUCCUGGUaaU---------------GAA---GGUAGa -5'
31663 5' -50.9 NC_006883.1 + 23681 0.74 0.858624
Target:  5'- gACCAGCAGGACCAgg---UCCAc-- -3'
miRNA:   3'- gUGGUCGUCCUGGUaaugaAGGUaga -5'
31663 5' -50.9 NC_006883.1 + 22243 0.75 0.84262
Target:  5'- -uCCAGCAGGACCAggaggaccACUUggaCCAUCUg -3'
miRNA:   3'- guGGUCGUCCUGGUaa------UGAA---GGUAGA- -5'
31663 5' -50.9 NC_006883.1 + 28229 0.75 0.84262
Target:  5'- gACCAGCAGGACCAgucggACcagUUCCAccaUCa -3'
miRNA:   3'- gUGGUCGUCCUGGUaa---UG---AAGGU---AGa -5'
31663 5' -50.9 NC_006883.1 + 27711 0.75 0.834319
Target:  5'- gACCAGUAGGACCugauccaccAUcAUUUCCAUCa -3'
miRNA:   3'- gUGGUCGUCCUGG---------UAaUGAAGGUAGa -5'
31663 5' -50.9 NC_006883.1 + 28349 0.75 0.825831
Target:  5'- gACCAGCAGGACCAg---UUCCGcCUg -3'
miRNA:   3'- gUGGUCGUCCUGGUaaugAAGGUaGA- -5'
31663 5' -50.9 NC_006883.1 + 21879 0.75 0.808318
Target:  5'- cCACCAGCAGGACCAgaggACcagcaggUCCAg-- -3'
miRNA:   3'- -GUGGUCGUCCUGGUaa--UGa------AGGUaga -5'
31663 5' -50.9 NC_006883.1 + 22199 0.76 0.771399
Target:  5'- gACCAGCAGGACCAggACcaCCA-CUa -3'
miRNA:   3'- gUGGUCGUCCUGGUaaUGaaGGUaGA- -5'
31663 5' -50.9 NC_006883.1 + 22059 0.78 0.681805
Target:  5'- cCACCAGCAGGACCAguuggACcuguaggaCCGUCUg -3'
miRNA:   3'- -GUGGUCGUCCUGGUaa---UGaa------GGUAGA- -5'
31663 5' -50.9 NC_006883.1 + 28176 0.78 0.671515
Target:  5'- gCACCAGCAGGACCAguuggACcagUUCCAcCUg -3'
miRNA:   3'- -GUGGUCGUCCUGGUaa---UG---AAGGUaGA- -5'
31663 5' -50.9 NC_006883.1 + 21807 0.8 0.58873
Target:  5'- gGCCAGCAGGACCAggACcgCCAcCUg -3'
miRNA:   3'- gUGGUCGUCCUGGUaaUGaaGGUaGA- -5'
31663 5' -50.9 NC_006883.1 + 223032 0.8 0.54786
Target:  5'- gACCAGUAGGACCAggAUUUCCAa-- -3'
miRNA:   3'- gUGGUCGUCCUGGUaaUGAAGGUaga -5'
31663 5' -50.9 NC_006883.1 + 26624 0.81 0.517801
Target:  5'- gACCAGCAGGACCAguuggaccugUUGCaccaucauUUCCAUCUg -3'
miRNA:   3'- gUGGUCGUCCUGGU----------AAUG--------AAGGUAGA- -5'
31663 5' -50.9 NC_006883.1 + 26751 1.09 0.013996
Target:  5'- gCACCAGCAGGACCAUUACUUCCAUCUg -3'
miRNA:   3'- -GUGGUCGUCCUGGUAAUGAAGGUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.