miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31665 5' -49.4 NC_006883.1 + 247347 0.66 0.999895
Target:  5'- uGAGUGCUAccUCuUACCAUUuGAACCa -3'
miRNA:   3'- cCUCAUGGUcaAG-GUGGUAGuCUUGG- -5'
31665 5' -49.4 NC_006883.1 + 98012 0.66 0.999887
Target:  5'- ---uUGCUGGUcaaauuauuuuagaUCCACCAUCAGAuaACUg -3'
miRNA:   3'- ccucAUGGUCA--------------AGGUGGUAGUCU--UGG- -5'
31665 5' -49.4 NC_006883.1 + 233405 0.66 0.999865
Target:  5'- --uGUGCCauAGUUCCAUCAguUgAGAACUc -3'
miRNA:   3'- ccuCAUGG--UCAAGGUGGU--AgUCUUGG- -5'
31665 5' -49.4 NC_006883.1 + 186584 0.66 0.999827
Target:  5'- uGAGaUACCAGaUgCuCCAUCAGcACCu -3'
miRNA:   3'- cCUC-AUGGUCaAgGuGGUAGUCuUGG- -5'
31665 5' -49.4 NC_006883.1 + 28282 0.66 0.99978
Target:  5'- uGGaAGUGguccuCCAGgUCCACCAggaacuUCAGGugCu -3'
miRNA:   3'- -CC-UCAU-----GGUCaAGGUGGU------AGUCUugG- -5'
31665 5' -49.4 NC_006883.1 + 37879 0.66 0.99978
Target:  5'- uGGAGUuaucuCUGGUguaUCCACgAUUGGAAUCu -3'
miRNA:   3'- -CCUCAu----GGUCA---AGGUGgUAGUCUUGG- -5'
31665 5' -49.4 NC_006883.1 + 122526 0.66 0.99978
Target:  5'- uGAGUAgCAGcggcUCCACCAgaagCAGAGa- -3'
miRNA:   3'- cCUCAUgGUCa---AGGUGGUa---GUCUUgg -5'
31665 5' -49.4 NC_006883.1 + 127458 0.66 0.99978
Target:  5'- cGGAacuacUACCAGUaagugcUCCAUCAUCA--ACCa -3'
miRNA:   3'- -CCUc----AUGGUCA------AGGUGGUAGUcuUGG- -5'
31665 5' -49.4 NC_006883.1 + 181751 0.67 0.999723
Target:  5'- aGGAGagACCAGaaCCAgCAgCAGcACCa -3'
miRNA:   3'- -CCUCa-UGGUCaaGGUgGUaGUCuUGG- -5'
31665 5' -49.4 NC_006883.1 + 5429 0.67 0.999723
Target:  5'- -cAGUAUCAGgUCuagCACCAUCAGcAACUa -3'
miRNA:   3'- ccUCAUGGUCaAG---GUGGUAGUC-UUGG- -5'
31665 5' -49.4 NC_006883.1 + 27581 0.67 0.999723
Target:  5'- uGGAGgaccugcuggACCuGUgCCACCAcCuGGACCa -3'
miRNA:   3'- -CCUCa---------UGGuCAaGGUGGUaGuCUUGG- -5'
31665 5' -49.4 NC_006883.1 + 184452 0.67 0.999653
Target:  5'- ---cUGCUuAGUUCCACCAUCAuAACUc -3'
miRNA:   3'- ccucAUGG-UCAAGGUGGUAGUcUUGG- -5'
31665 5' -49.4 NC_006883.1 + 21811 0.67 0.999568
Target:  5'- uGAGggccagcaggACCAGgaCCGCCAcCuGGACCa -3'
miRNA:   3'- cCUCa---------UGGUCaaGGUGGUaGuCUUGG- -5'
31665 5' -49.4 NC_006883.1 + 4409 0.67 0.999465
Target:  5'- gGGAGUAUaacuuuacaaaUGGUagaucUUCACCAUCAGGAgCa -3'
miRNA:   3'- -CCUCAUG-----------GUCA-----AGGUGGUAGUCUUgG- -5'
31665 5' -49.4 NC_006883.1 + 214611 0.67 0.999465
Target:  5'- aGGAGUGauacuCCAGaUCUACCAUCAucAUa -3'
miRNA:   3'- -CCUCAU-----GGUCaAGGUGGUAGUcuUGg -5'
31665 5' -49.4 NC_006883.1 + 12860 0.67 0.999342
Target:  5'- -cAGUACCAGgagCaauaucaACCGUCuuuGAACCg -3'
miRNA:   3'- ccUCAUGGUCaa-Gg------UGGUAGu--CUUGG- -5'
31665 5' -49.4 NC_006883.1 + 21849 0.67 0.999342
Target:  5'- -cAGUaggACCAGgaCCACCAcUCGGA-CCa -3'
miRNA:   3'- ccUCA---UGGUCaaGGUGGU-AGUCUuGG- -5'
31665 5' -49.4 NC_006883.1 + 21767 0.68 0.998901
Target:  5'- uGGAGgaccagaaggACCAGUuauUCCaguuggaccuggaggACCAgCAGGACCa -3'
miRNA:   3'- -CCUCa---------UGGUCA---AGG---------------UGGUaGUCUUGG- -5'
31665 5' -49.4 NC_006883.1 + 21940 0.68 0.998815
Target:  5'- aGGAGgACCAGUUggaccuguuggaCCAgCAUCAccuugcGGACCu -3'
miRNA:   3'- -CCUCaUGGUCAA------------GGUgGUAGU------CUUGG- -5'
31665 5' -49.4 NC_006883.1 + 19871 0.68 0.998573
Target:  5'- -aGGUACUguGGUUCCACCAcuagaaguaacuUCGGuuGCCu -3'
miRNA:   3'- ccUCAUGG--UCAAGGUGGU------------AGUCu-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.