Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31666 | 3' | -54.8 | NC_006883.1 | + | 21767 | 0.75 | 0.625857 |
Target: 5'- -uGgAGGACCAGaaGGACCAGUuauUCCAg -3' miRNA: 3'- guCgUCCUGGUCaaCCUGGUCA---AGGU- -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 21805 | 0.76 | 0.57568 |
Target: 5'- cCAGCAGGACCAGgaccgccaccUGGACCAGa---- -3' miRNA: 3'- -GUCGUCCUGGUCa---------ACCUGGUCaaggu -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 23322 | 0.78 | 0.460484 |
Target: 5'- cCAGCAGGACCuugaGGACCAGUUggaCCAc -3' miRNA: 3'- -GUCGUCCUGGucaaCCUGGUCAA---GGU- -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 222921 | 0.78 | 0.451412 |
Target: 5'- nAGUAGGACCAGcaGGACCAGUaguaCCAg -3' miRNA: 3'- gUCGUCCUGGUCaaCCUGGUCAa---GGU- -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 28142 | 0.79 | 0.407585 |
Target: 5'- ---aAGGACCAGUUGGACCAGUUggaCCu -3' miRNA: 3'- gucgUCCUGGUCAACCUGGUCAA---GGu -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 223039 | 0.79 | 0.390816 |
Target: 5'- cCAGaAGGACCAGUaGGACCAGgauUUCCAa -3' miRNA: 3'- -GUCgUCCUGGUCAaCCUGGUC---AAGGU- -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 28108 | 0.8 | 0.366521 |
Target: 5'- -uGUAGGACCAGUUGGACCuggAGgaCCAg -3' miRNA: 3'- guCGUCCUGGUCAACCUGG---UCaaGGU- -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 22242 | 0.81 | 0.335782 |
Target: 5'- cCAGCAGGACCAGgaGGACCAcuuGgaCCAu -3' miRNA: 3'- -GUCGUCCUGGUCaaCCUGGU---CaaGGU- -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 223078 | 0.81 | 0.321133 |
Target: 5'- cCAGCAGGACCAGgaGGACCuggAGgaCCAa -3' miRNA: 3'- -GUCGUCCUGGUCaaCCUGG---UCaaGGU- -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 28371 | 0.81 | 0.309762 |
Target: 5'- uCAGCaccaggagguccuggAGGACCAGcaGGACCAGUUCCGc -3' miRNA: 3'- -GUCG---------------UCCUGGUCaaCCUGGUCAAGGU- -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 21724 | 0.83 | 0.255106 |
Target: 5'- cCAGCAGGACCAGUaGGACCAccaccguUUCCAc -3' miRNA: 3'- -GUCGUCCUGGUCAaCCUGGUc------AAGGU- -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 21942 | 0.83 | 0.243317 |
Target: 5'- cCAGgAGGACCAGUUGGACCuGUUggaCCAg -3' miRNA: 3'- -GUCgUCCUGGUCAACCUGGuCAA---GGU- -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 222949 | 0.83 | 0.237594 |
Target: 5'- cCAGCAGGACCAGcaGGACCAGgagaaCCAg -3' miRNA: 3'- -GUCGUCCUGGUCaaCCUGGUCaa---GGU- -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 23942 | 0.84 | 0.215822 |
Target: 5'- cCAGUcGGACCAGUUGGACCAGUUggaCCu -3' miRNA: 3'- -GUCGuCCUGGUCAACCUGGUCAA---GGu -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 23148 | 0.85 | 0.195783 |
Target: 5'- cCAGCAGGACCAGUUGGACCuGgagcaCCu -3' miRNA: 3'- -GUCGUCCUGGUCAACCUGGuCaa---GGu -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 21876 | 0.85 | 0.191034 |
Target: 5'- cCAGCAGGACCAGa-GGACCAGcaggUCCAg -3' miRNA: 3'- -GUCGUCCUGGUCaaCCUGGUCa---AGGU- -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 23220 | 0.86 | 0.168779 |
Target: 5'- cCAGCAGGACCAGgaGGACCAGgaggaCCAc -3' miRNA: 3'- -GUCGUCCUGGUCaaCCUGGUCaa---GGU- -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 26783 | 0.86 | 0.156567 |
Target: 5'- nAGCAGGACCAGUUGGACCugcAGgaCCAg -3' miRNA: 3'- gUCGUCCUGGUCAACCUGG---UCaaGGU- -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 22056 | 0.88 | 0.127823 |
Target: 5'- cCAGCAGGACCAGUUGGACCuguAGgaCCGu -3' miRNA: 3'- -GUCGUCCUGGUCAACCUGG---UCaaGGU- -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 26657 | 0.89 | 0.112419 |
Target: 5'- -cGUcuGGACCAGUUGGACCAGUUCCAc -3' miRNA: 3'- guCGu-CCUGGUCAACCUGGUCAAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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