miRNA display CGI


Results 21 - 40 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31667 3' -57.7 NC_006883.1 + 22012 0.74 0.591925
Target:  5'- aCCaGCa-GGACCAGUUGGACCaGGAc- -3'
miRNA:   3'- -GG-CGgaCCUGGUCAACCUGGaCCUcc -5'
31667 3' -57.7 NC_006883.1 + 22198 0.75 0.505311
Target:  5'- aCCaGCa-GGACCAGgaccaccacuaGGACCUGGAGGa -3'
miRNA:   3'- -GG-CGgaCCUGGUCaa---------CCUGGACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 23221 0.76 0.479987
Target:  5'- aCCaGCa-GGACCAGgaGGACCaGGAGGa -3'
miRNA:   3'- -GG-CGgaCCUGGUCaaCCUGGaCCUCC- -5'
31667 3' -57.7 NC_006883.1 + 28492 0.76 0.479987
Target:  5'- uCCaCCUGGACCAGgaggaccaUcuccaccaguaGGACCUGGAGGu -3'
miRNA:   3'- -GGcGGACCUGGUCa-------A-----------CCUGGACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 21755 0.76 0.43639
Target:  5'- -----aGGACCAGUuauuccaguUGGACCUGGAGGa -3'
miRNA:   3'- ggcggaCCUGGUCA---------ACCUGGACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 21985 0.77 0.427946
Target:  5'- uCCaCUUGGACCAGgaGGACCUGcAGGa -3'
miRNA:   3'- -GGcGGACCUGGUCaaCCUGGACcUCC- -5'
31667 3' -57.7 NC_006883.1 + 26697 0.77 0.403206
Target:  5'- -gGaCCUGGAguaCCAGUuccaccaccUGGACCUGGAGGn -3'
miRNA:   3'- ggC-GGACCU---GGUCA---------ACCUGGACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 23314 0.77 0.395163
Target:  5'- aCCuUgaGGACCAGUUGGACCaccgauaccUGGAGGa -3'
miRNA:   3'- -GGcGgaCCUGGUCAACCUGG---------ACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 25023 0.78 0.371666
Target:  5'- aCCuCCuguUGGACCuGgaGGACCUGGAGGa -3'
miRNA:   3'- -GGcGG---ACCUGGuCaaCCUGGACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 28138 0.78 0.356538
Target:  5'- aCCagUUGGACCAGUUGGACCUGuAGGu -3'
miRNA:   3'- -GGcgGACCUGGUCAACCUGGACcUCC- -5'
31667 3' -57.7 NC_006883.1 + 23410 0.78 0.349139
Target:  5'- aCCaUCUGGuCCAGUUGGACCUGuGGGa -3'
miRNA:   3'- -GGcGGACCuGGUCAACCUGGACcUCC- -5'
31667 3' -57.7 NC_006883.1 + 23934 0.79 0.320644
Target:  5'- aCCagUUGGACCAGUUGGACCUGuAGGa -3'
miRNA:   3'- -GGcgGACCUGGUCAACCUGGACcUCC- -5'
31667 3' -57.7 NC_006883.1 + 27764 0.79 0.313798
Target:  5'- uCCaGCa-GGACCAGUUGGACCUGuGGGa -3'
miRNA:   3'- -GG-CGgaCCUGGUCAACCUGGACcUCC- -5'
31667 3' -57.7 NC_006883.1 + 22057 0.8 0.287525
Target:  5'- aCCaGCa-GGACCAGUUGGACCUGuAGGa -3'
miRNA:   3'- -GG-CGgaCCUGGUCAACCUGGACcUCC- -5'
31667 3' -57.7 NC_006883.1 + 26785 0.8 0.287525
Target:  5'- aCCaGCa-GGACCAGUUGGACCUGcAGGa -3'
miRNA:   3'- -GG-CGgaCCUGGUCAACCUGGACcUCC- -5'
31667 3' -57.7 NC_006883.1 + 23382 0.81 0.245766
Target:  5'- cCUGUg-GGACCAGUUGGACCUGGAu- -3'
miRNA:   3'- -GGCGgaCCUGGUCAACCUGGACCUcc -5'
31667 3' -57.7 NC_006883.1 + 24957 0.83 0.181626
Target:  5'- aCCaCUUGGACCuGUaGGACCUGGAGGa -3'
miRNA:   3'- -GGcGGACCUGGuCAaCCUGGACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 223079 0.84 0.177361
Target:  5'- aCCaGCa-GGACCAGgaGGACCUGGAGGa -3'
miRNA:   3'- -GG-CGgaCCUGGUCaaCCUGGACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 26659 0.84 0.157347
Target:  5'- aCCGUCUGGACCAGUUGGACCaguuccaccugUGGGa- -3'
miRNA:   3'- -GGCGGACCUGGUCAACCUGG-----------ACCUcc -5'
31667 3' -57.7 NC_006883.1 + 22225 0.85 0.149929
Target:  5'- aCCaCUUGGACCAucUGGACCUGGAGGa -3'
miRNA:   3'- -GGcGGACCUGGUcaACCUGGACCUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.