miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31667 5' -56.6 NC_006883.1 + 28149 0.8 0.277375
Target:  5'- cCACCuGaAGGACCAGUuGGACCAGUUg -3'
miRNA:   3'- -GUGGuCaUCCUGGUCGuCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 223081 0.79 0.324753
Target:  5'- cCACCAGcAGGACCAGgAGGACCuGg- -3'
miRNA:   3'- -GUGGUCaUCCUGGUCgUCCUGGuCag -5'
31667 5' -56.6 NC_006883.1 + 21945 0.78 0.362129
Target:  5'- gUACCAGgAGGACCAGUuGGACCuGUUg -3'
miRNA:   3'- -GUGGUCaUCCUGGUCGuCCUGGuCAG- -5'
31667 5' -56.6 NC_006883.1 + 22142 0.78 0.36838
Target:  5'- gACCAGgugaaccacuuGGACCAGCAGGACCA-UCu -3'
miRNA:   3'- gUGGUCau---------CCUGGUCGUCCUGGUcAG- -5'
31667 5' -56.6 NC_006883.1 + 21780 0.77 0.394114
Target:  5'- gACCAGaaggaccuggAGGACCAGaAGGACCAGUUa -3'
miRNA:   3'- gUGGUCa---------UCCUGGUCgUCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 23159 0.77 0.427873
Target:  5'- aACCuGgAGcACCAGCAGGACCAGUUg -3'
miRNA:   3'- gUGGuCaUCcUGGUCGUCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 23917 0.76 0.445381
Target:  5'- gACCuGUAGGACCuGCuGGACCuGUUg -3'
miRNA:   3'- gUGGuCAUCCUGGuCGuCCUGGuCAG- -5'
31667 5' -56.6 NC_006883.1 + 22254 0.76 0.454284
Target:  5'- gCACCAGcAGauCCAGCAGGACCAGg- -3'
miRNA:   3'- -GUGGUCaUCcuGGUCGUCCUGGUCag -5'
31667 5' -56.6 NC_006883.1 + 23253 0.75 0.481555
Target:  5'- uCACCAGcAGGACCAGUuGGACCuGg- -3'
miRNA:   3'- -GUGGUCaUCCUGGUCGuCCUGGuCag -5'
31667 5' -56.6 NC_006883.1 + 27504 0.75 0.519094
Target:  5'- gACCuGUAGGACCugcuggaccuGUAGGACCAGg- -3'
miRNA:   3'- gUGGuCAUCCUGGu---------CGUCCUGGUCag -5'
31667 5' -56.6 NC_006883.1 + 26713 0.66 0.931859
Target:  5'- -uCCAGgAGGACCuGCuGGACCuggAGUa -3'
miRNA:   3'- guGGUCaUCCUGGuCGuCCUGG---UCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.