Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31669 | 3' | -56.8 | NC_006883.1 | + | 28465 | 1.13 | 0.002752 |
Target: 5'- aCCAGUAGGACCUGGAGGUCCUGGAGGa -3' miRNA: 3'- -GGUCAUCCUGGACCUCCAGGACCUCC- -5' |
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31669 | 3' | -56.8 | NC_006883.1 | + | 28339 | 0.92 | 0.060499 |
Target: 5'- aCCAGUuccgccuGGACCUGGAGGaCCUGGAGGa -3' miRNA: 3'- -GGUCAu------CCUGGACCUCCaGGACCUCC- -5' |
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31669 | 3' | -56.8 | NC_006883.1 | + | 25020 | 0.89 | 0.100486 |
Target: 5'- uCCuGUuGGACCUGGAGGaCCUGGAGGa -3' miRNA: 3'- -GGuCAuCCUGGACCUCCaGGACCUCC- -5' |
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31669 | 3' | -56.8 | NC_006883.1 | + | 223079 | 0.88 | 0.111051 |
Target: 5'- aCCAGcAGGACCaGGAGGaCCUGGAGGa -3' miRNA: 3'- -GGUCaUCCUGGaCCUCCaGGACCUCC- -5' |
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31669 | 3' | -56.8 | NC_006883.1 | + | 22180 | 0.84 | 0.192629 |
Target: 5'- aCCAcUAGGACCUGGAGGaccaccacuaggaCCUGGAGGa -3' miRNA: 3'- -GGUcAUCCUGGACCUCCa------------GGACCUCC- -5' |
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31669 | 3' | -56.8 | NC_006883.1 | + | 28129 | 0.81 | 0.28117 |
Target: 5'- aCCAGUuGGACCUGuAGGUCCUGuAGGa -3' miRNA: 3'- -GGUCAuCCUGGACcUCCAGGACcUCC- -5' |
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31669 | 3' | -56.8 | NC_006883.1 | + | 23140 | 0.81 | 0.28117 |
Target: 5'- aCCAGUuGGACCUGGAGcaCCUGGAucGGg -3' miRNA: 3'- -GGUCAuCCUGGACCUCcaGGACCU--CC- -5' |
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31669 | 3' | -56.8 | NC_006883.1 | + | 23221 | 0.8 | 0.327838 |
Target: 5'- aCCAGcAGGACCaGGAGGaCCaGGAGGa -3' miRNA: 3'- -GGUCaUCCUGGaCCUCCaGGaCCUCC- -5' |
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31669 | 3' | -56.8 | NC_006883.1 | + | 27593 | 0.8 | 0.334955 |
Target: 5'- uCCAGgAGGACCUGGAGGaCCUGcuGGa -3' miRNA: 3'- -GGUCaUCCUGGACCUCCaGGACcuCC- -5' |
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31669 | 3' | -56.8 | NC_006883.1 | + | 23734 | 0.8 | 0.334955 |
Target: 5'- uCCAGgAGGACCUGcuGGaCCUGGAGGa -3' miRNA: 3'- -GGUCaUCCUGGACcuCCaGGACCUCC- -5' |
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31669 | 3' | -56.8 | NC_006883.1 | + | 27665 | 0.8 | 0.300497 |
Target: 5'- uCCAGgAGGACCUGGAGGaccugcuggaCCUGGAGu -3' miRNA: 3'- -GGUCaUCCUGGACCUCCa---------GGACCUCc -5' |
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31669 | 3' | -56.8 | NC_006883.1 | + | 28420 | 0.79 | 0.372214 |
Target: 5'- aCCAucAGaACCUGGAGGaCCUGGAGGa -3' miRNA: 3'- -GGUcaUCcUGGACCUCCaGGACCUCC- -5' |
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31669 | 3' | -56.8 | NC_006883.1 | + | 22087 | 0.79 | 0.36454 |
Target: 5'- aCCAcuuGGACCaGGAGGaCCUGGAGGa -3' miRNA: 3'- -GGUcauCCUGGaCCUCCaGGACCUCC- -5' |
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31669 | 3' | -56.8 | NC_006883.1 | + | 28375 | 0.78 | 0.395885 |
Target: 5'- aCCGucAGcACCaGGAGGUCCUGGAGGa -3' miRNA: 3'- -GGUcaUCcUGGaCCUCCAGGACCUCC- -5' |
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31669 | 3' | -56.8 | NC_006883.1 | + | 21779 | 0.78 | 0.391073 |
Target: 5'- aCCAGaAGGACCUGGAGGaccagaaggaccaguUauuccaguuggaCCUGGAGGa -3' miRNA: 3'- -GGUCaUCCUGGACCUCC---------------A------------GGACCUCC- -5' |
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31669 | 3' | -56.8 | NC_006883.1 | + | 28102 | 0.76 | 0.49952 |
Target: 5'- aCCAGUuGGACCUGGAGGaCCaGcAGGa -3' miRNA: 3'- -GGUCAuCCUGGACCUCCaGGaCcUCC- -5' |
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31669 | 3' | -56.8 | NC_006883.1 | + | 22234 | 0.75 | 0.546166 |
Target: 5'- aCCAGgAGGACCacuUGGAccaucuGGaCCUGGAGGa -3' miRNA: 3'- -GGUCaUCCUGG---ACCU------CCaGGACCUCC- -5' |
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31669 | 3' | -56.8 | NC_006883.1 | + | 24957 | 0.75 | 0.555672 |
Target: 5'- aCCAcuuGGACCUGuAGGaCCUGGAGGa -3' miRNA: 3'- -GGUcauCCUGGACcUCCaGGACCUCC- -5' |
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31669 | 3' | -56.8 | NC_006883.1 | + | 23251 | 0.74 | 0.632961 |
Target: 5'- aCCAGcAGGACCaGuuGGaCCUGGAGGa -3' miRNA: 3'- -GGUCaUCCUGGaCcuCCaGGACCUCC- -5' |
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31669 | 3' | -56.8 | NC_006883.1 | + | 23305 | 0.73 | 0.69106 |
Target: 5'- aCCAGUuGGACCaccgauaccUGGAGGaCCUuGAGGa -3' miRNA: 3'- -GGUCAuCCUGG---------ACCUCCaGGAcCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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