miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31669 3' -56.8 NC_006883.1 + 23251 0.74 0.632961
Target:  5'- aCCAGcAGGACCaGuuGGaCCUGGAGGa -3'
miRNA:   3'- -GGUCaUCCUGGaCcuCCaGGACCUCC- -5'
31669 3' -56.8 NC_006883.1 + 24957 0.75 0.555672
Target:  5'- aCCAcuuGGACCUGuAGGaCCUGGAGGa -3'
miRNA:   3'- -GGUcauCCUGGACcUCCaGGACCUCC- -5'
31669 3' -56.8 NC_006883.1 + 22234 0.75 0.546166
Target:  5'- aCCAGgAGGACCacuUGGAccaucuGGaCCUGGAGGa -3'
miRNA:   3'- -GGUCaUCCUGG---ACCU------CCaGGACCUCC- -5'
31669 3' -56.8 NC_006883.1 + 28102 0.76 0.49952
Target:  5'- aCCAGUuGGACCUGGAGGaCCaGcAGGa -3'
miRNA:   3'- -GGUCAuCCUGGACCUCCaGGaCcUCC- -5'
31669 3' -56.8 NC_006883.1 + 28375 0.78 0.395885
Target:  5'- aCCGucAGcACCaGGAGGUCCUGGAGGa -3'
miRNA:   3'- -GGUcaUCcUGGaCCUCCAGGACCUCC- -5'
31669 3' -56.8 NC_006883.1 + 21779 0.78 0.391073
Target:  5'- aCCAGaAGGACCUGGAGGaccagaaggaccaguUauuccaguuggaCCUGGAGGa -3'
miRNA:   3'- -GGUCaUCCUGGACCUCC---------------A------------GGACCUCC- -5'
31669 3' -56.8 NC_006883.1 + 28420 0.79 0.372214
Target:  5'- aCCAucAGaACCUGGAGGaCCUGGAGGa -3'
miRNA:   3'- -GGUcaUCcUGGACCUCCaGGACCUCC- -5'
31669 3' -56.8 NC_006883.1 + 22087 0.79 0.36454
Target:  5'- aCCAcuuGGACCaGGAGGaCCUGGAGGa -3'
miRNA:   3'- -GGUcauCCUGGaCCUCCaGGACCUCC- -5'
31669 3' -56.8 NC_006883.1 + 27593 0.8 0.334955
Target:  5'- uCCAGgAGGACCUGGAGGaCCUGcuGGa -3'
miRNA:   3'- -GGUCaUCCUGGACCUCCaGGACcuCC- -5'
31669 3' -56.8 NC_006883.1 + 23734 0.8 0.334955
Target:  5'- uCCAGgAGGACCUGcuGGaCCUGGAGGa -3'
miRNA:   3'- -GGUCaUCCUGGACcuCCaGGACCUCC- -5'
31669 3' -56.8 NC_006883.1 + 23221 0.8 0.327838
Target:  5'- aCCAGcAGGACCaGGAGGaCCaGGAGGa -3'
miRNA:   3'- -GGUCaUCCUGGaCCUCCaGGaCCUCC- -5'
31669 3' -56.8 NC_006883.1 + 27665 0.8 0.300497
Target:  5'- uCCAGgAGGACCUGGAGGaccugcuggaCCUGGAGu -3'
miRNA:   3'- -GGUCaUCCUGGACCUCCa---------GGACCUCc -5'
31669 3' -56.8 NC_006883.1 + 23140 0.81 0.28117
Target:  5'- aCCAGUuGGACCUGGAGcaCCUGGAucGGg -3'
miRNA:   3'- -GGUCAuCCUGGACCUCcaGGACCU--CC- -5'
31669 3' -56.8 NC_006883.1 + 28129 0.81 0.28117
Target:  5'- aCCAGUuGGACCUGuAGGUCCUGuAGGa -3'
miRNA:   3'- -GGUCAuCCUGGACcUCCAGGACcUCC- -5'
31669 3' -56.8 NC_006883.1 + 22180 0.84 0.192629
Target:  5'- aCCAcUAGGACCUGGAGGaccaccacuaggaCCUGGAGGa -3'
miRNA:   3'- -GGUcAUCCUGGACCUCCa------------GGACCUCC- -5'
31669 3' -56.8 NC_006883.1 + 223079 0.88 0.111051
Target:  5'- aCCAGcAGGACCaGGAGGaCCUGGAGGa -3'
miRNA:   3'- -GGUCaUCCUGGaCCUCCaGGACCUCC- -5'
31669 3' -56.8 NC_006883.1 + 25020 0.89 0.100486
Target:  5'- uCCuGUuGGACCUGGAGGaCCUGGAGGa -3'
miRNA:   3'- -GGuCAuCCUGGACCUCCaGGACCUCC- -5'
31669 3' -56.8 NC_006883.1 + 28339 0.92 0.060499
Target:  5'- aCCAGUuccgccuGGACCUGGAGGaCCUGGAGGa -3'
miRNA:   3'- -GGUCAu------CCUGGACCUCCaGGACCUCC- -5'
31669 3' -56.8 NC_006883.1 + 28465 1.13 0.002752
Target:  5'- aCCAGUAGGACCUGGAGGUCCUGGAGGa -3'
miRNA:   3'- -GGUCAUCCUGGACCUCCAGGACCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.