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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31670 | 3' | -56 | NC_006883.1 | + | 23236 | 0.77 | 0.491444 |
Target: 5'- uGGACCUGGAGGACCACcagCaggACCa-- -3' miRNA: 3'- -CCUGGACCUCCUGGUGaa-Gg--UGGacu -5' |
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31670 | 3' | -56 | NC_006883.1 | + | 28096 | 0.76 | 0.538432 |
Target: 5'- uGGACCUGGAGGACCAgcaggaCCuaaAUCUGAu -3' miRNA: 3'- -CCUGGACCUCCUGGUgaa---GG---UGGACU- -5' |
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31670 | 3' | -56 | NC_006883.1 | + | 23719 | 0.74 | 0.636037 |
Target: 5'- uGGACCUGGAGGACCuGCUgg-ACCaGAn -3' miRNA: 3'- -CCUGGACCUCCUGG-UGAaggUGGaCU- -5' |
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31670 | 3' | -56 | NC_006883.1 | + | 23386 | 0.74 | 0.645892 |
Target: 5'- gGGACCUGuGGGACCAgUUggACCUGGa -3' miRNA: 3'- -CCUGGACcUCCUGGUgAAggUGGACU- -5' |
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31670 | 3' | -56 | NC_006883.1 | + | 26770 | 0.74 | 0.655737 |
Target: 5'- uGGACCUGcAGGACCAgUUgCACCa-- -3' miRNA: 3'- -CCUGGACcUCCUGGUgAAgGUGGacu -5' |
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31670 | 3' | -56 | NC_006883.1 | + | 23317 | 0.73 | 0.694863 |
Target: 5'- aGGACCUuGAGGACCAgUUggaCCACCg-- -3' miRNA: 3'- -CCUGGAcCUCCUGGUgAA---GGUGGacu -5' |
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31670 | 3' | -56 | NC_006883.1 | + | 24969 | 0.73 | 0.714166 |
Target: 5'- uGGACCUGauGGACCACUUggACCUGu -3' miRNA: 3'- -CCUGGACcuCCUGGUGAAggUGGACu -5' |
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31670 | 3' | -56 | NC_006883.1 | + | 28222 | 0.72 | 0.742613 |
Target: 5'- aGGACCaGucGGACCAgUUCCACCa-- -3' miRNA: 3'- -CCUGGaCcuCCUGGUgAAGGUGGacu -5' |
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31670 | 3' | -56 | NC_006883.1 | + | 22209 | 0.72 | 0.755626 |
Target: 5'- nGACCUGGAGGACCAgcaggaccaggaCCACCa-- -3' miRNA: 3'- cCUGGACCUCCUGGUgaa---------GGUGGacu -5' |
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31670 | 3' | -56 | NC_006883.1 | + | 165904 | 0.66 | 0.971592 |
Target: 5'- -aACCUGGAGGACauuuagACUUCCuCUUaGAu -3' miRNA: 3'- ccUGGACCUCCUGg-----UGAAGGuGGA-CU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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