miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31670 5' -55.6 NC_006883.1 + 23343 0.76 0.497883
Target:  5'- gGACCAGUUGGACCuggagaaccagcAGgaccuugaGGACCAGUUg -3'
miRNA:   3'- -CUGGUCAACCUGG------------UCag------CCUGGUCAA- -5'
31670 5' -55.6 NC_006883.1 + 21772 0.77 0.442808
Target:  5'- gGACCuGgaGGACCAGaaGGACCAGUUa -3'
miRNA:   3'- -CUGGuCaaCCUGGUCagCCUGGUCAA- -5'
31670 5' -55.6 NC_006883.1 + 23394 0.77 0.442808
Target:  5'- gGACCuGUgGGACCuGUgGGACCAGUUg -3'
miRNA:   3'- -CUGGuCAaCCUGGuCAgCCUGGUCAA- -5'
31670 5' -55.6 NC_006883.1 + 222924 0.78 0.425222
Target:  5'- aACCAGUaGGACCAG-CaGGACCAGUa -3'
miRNA:   3'- cUGGUCAaCCUGGUCaG-CCUGGUCAa -5'
31670 5' -55.6 NC_006883.1 + 22058 0.78 0.383145
Target:  5'- cACCAGcaGGACCAGUUGGACCuGUa -3'
miRNA:   3'- cUGGUCaaCCUGGUCAGCCUGGuCAa -5'
31670 5' -55.6 NC_006883.1 + 28104 0.79 0.351535
Target:  5'- gGACCAGUUGGACCuggaGGACCAGc- -3'
miRNA:   3'- -CUGGUCAACCUGGucagCCUGGUCaa -5'
31670 5' -55.6 NC_006883.1 + 223033 0.8 0.334956
Target:  5'- gGACCAGUaGGACCAGgauuuccaacaGGACCAGUUg -3'
miRNA:   3'- -CUGGUCAaCCUGGUCag---------CCUGGUCAA- -5'
31670 5' -55.6 NC_006883.1 + 26805 0.81 0.27443
Target:  5'- gGACCAGUUGGACCuGgUGGACCAGc- -3'
miRNA:   3'- -CUGGUCAACCUGGuCaGCCUGGUCaa -5'
31670 5' -55.6 NC_006883.1 + 26625 0.83 0.211473
Target:  5'- gGACCAGcaGGACCAGUUGGACCuGUUg -3'
miRNA:   3'- -CUGGUCaaCCUGGUCAGCCUGGuCAA- -5'
31670 5' -55.6 NC_006883.1 + 26778 0.84 0.178205
Target:  5'- gGACCAGUUGGACCugcaGGACCAGUUg -3'
miRNA:   3'- -CUGGUCAACCUGGucagCCUGGUCAA- -5'
31670 5' -55.6 NC_006883.1 + 28175 0.85 0.153474
Target:  5'- cACCAGcaGGACCAGUUGGACCAGUUc -3'
miRNA:   3'- cUGGUCaaCCUGGUCAGCCUGGUCAA- -5'
31670 5' -55.6 NC_006883.1 + 26661 0.86 0.135287
Target:  5'- gGACCGucUGGACCAGUUGGACCAGUUc -3'
miRNA:   3'- -CUGGUcaACCUGGUCAGCCUGGUCAA- -5'
31670 5' -55.6 NC_006883.1 + 22014 0.87 0.131895
Target:  5'- gGACCAGcaGGACCAGUUGGACCAGg- -3'
miRNA:   3'- -CUGGUCaaCCUGGUCAGCCUGGUCaa -5'
31670 5' -55.6 NC_006883.1 + 21936 0.89 0.087339
Target:  5'- gGACCAGUUGGACCuGUUGGACCAGc- -3'
miRNA:   3'- -CUGGUCAACCUGGuCAGCCUGGUCaa -5'
31670 5' -55.6 NC_006883.1 + 28290 0.91 0.065446
Target:  5'- gGACCAGUUGGACCAGUuccgccUGGACCAGUUg -3'
miRNA:   3'- -CUGGUCAACCUGGUCA------GCCUGGUCAA- -5'
31670 5' -55.6 NC_006883.1 + 27757 0.92 0.063741
Target:  5'- gGACCAGUUGGACCuGUgGGACCAGUUg -3'
miRNA:   3'- -CUGGUCAACCUGGuCAgCCUGGUCAA- -5'
31670 5' -55.6 NC_006883.1 + 28230 0.93 0.052954
Target:  5'- gGACCAGcaGGACCAGUCGGACCAGUUc -3'
miRNA:   3'- -CUGGUCaaCCUGGUCAGCCUGGUCAA- -5'
31670 5' -55.6 NC_006883.1 + 23936 0.94 0.047609
Target:  5'- gGACCAGUUGGACCAGUUGGACCuGUa -3'
miRNA:   3'- -CUGGUCAACCUGGUCAGCCUGGuCAa -5'
31670 5' -55.6 NC_006883.1 + 28140 0.94 0.047609
Target:  5'- gGACCAGUUGGACCAGUUGGACCuGUa -3'
miRNA:   3'- -CUGGUCAACCUGGUCAGCCUGGuCAa -5'
31670 5' -55.6 NC_006883.1 + 28518 1.04 0.009438
Target:  5'- gGACCAGUUGGACCAGUCGGACCAGUUc -3'
miRNA:   3'- -CUGGUCAACCUGGUCAGCCUGGUCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.