Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 31672 | 5' | -40 | NC_006883.1 | + | 63452 | 0.7 | 1 |
|
Target: 5'- aGUUAgAaUGUGUCAUAaGUGGUGAUg -3' miRNA: 3'- aCAAUgUaAUAUAGUGUgUACUACUG- -5' |
|||||||
| 31672 | 5' | -40 | NC_006883.1 | + | 251869 | 0.68 | 1 |
|
Target: 5'- cGUUG-AUUGUAUUGCugAguaUGAUGGCg -3' miRNA: 3'- aCAAUgUAAUAUAGUGugU---ACUACUG- -5' |
|||||||
| 31672 | 5' | -40 | NC_006883.1 | + | 114727 | 0.66 | 1 |
|
Target: 5'- -uUUACAUguaGUCcCACAUGuAUGACu -3' miRNA: 3'- acAAUGUAauaUAGuGUGUAC-UACUG- -5' |
|||||||
| 31672 | 5' | -40 | NC_006883.1 | + | 183745 | 0.67 | 1 |
|
Target: 5'- --aUACcaUGUAUCAUACAUGAauauguaguauaUGGCa -3' miRNA: 3'- acaAUGuaAUAUAGUGUGUACU------------ACUG- -5' |
|||||||
| 31672 | 5' | -40 | NC_006883.1 | + | 237289 | 0.69 | 1 |
|
Target: 5'- aUGUUuaAUAUUAUAUCAUugGUGAUu-- -3' miRNA: 3'- -ACAA--UGUAAUAUAGUGugUACUAcug -5' |
|||||||
| 31672 | 5' | -40 | NC_006883.1 | + | 68484 | 1.14 | 0.091727 |
|
Target: 5'- gUGUUACAUUAUAUCACACAUGAUGACg -3' miRNA: 3'- -ACAAUGUAAUAUAGUGUGUACUACUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home