miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31674 3' -42.3 NC_006883.1 + 28214 0.66 1
Target:  5'- -gGAGAUGGuccucCugGUCCAGGUGg -3'
miRNA:   3'- agUUUUAUUuuuc-GugCAGGUCCAUa -5'
31674 3' -42.3 NC_006883.1 + 17012 0.66 1
Target:  5'- aCGAcaccuGGAGCACGuuUCCAGGUu- -3'
miRNA:   3'- aGUUuuauuUUUCGUGC--AGGUCCAua -5'
31674 3' -42.3 NC_006883.1 + 44561 0.66 1
Target:  5'- aUUAAAAUAAu--GCACGUUCAuaguGGUGa -3'
miRNA:   3'- -AGUUUUAUUuuuCGUGCAGGU----CCAUa -5'
31674 3' -42.3 NC_006883.1 + 123280 0.67 1
Target:  5'- cCAuAAUuuAAAGCAgGUCUAGGa-- -3'
miRNA:   3'- aGUuUUAuuUUUCGUgCAGGUCCaua -5'
31674 3' -42.3 NC_006883.1 + 146052 0.67 1
Target:  5'- aUCAAAGUGGucauggagaauauguAAAGgGCGUuuGGGUAUc -3'
miRNA:   3'- -AGUUUUAUU---------------UUUCgUGCAggUCCAUA- -5'
31674 3' -42.3 NC_006883.1 + 39416 0.67 1
Target:  5'- cUCAAGAU-GAAGGUGa-UCCAGGUAa -3'
miRNA:   3'- -AGUUUUAuUUUUCGUgcAGGUCCAUa -5'
31674 3' -42.3 NC_006883.1 + 21556 0.68 1
Target:  5'- cUCAAGGUGAu--GUugGUCCGaguGGUGg -3'
miRNA:   3'- -AGUUUUAUUuuuCGugCAGGU---CCAUa -5'
31674 3' -42.3 NC_006883.1 + 235109 0.67 1
Target:  5'- cCAGAAUGAAAAuGU---UCCAGGUAUa -3'
miRNA:   3'- aGUUUUAUUUUU-CGugcAGGUCCAUA- -5'
31674 3' -42.3 NC_006883.1 + 237427 0.72 0.999988
Target:  5'- -uGAAGUAAAAGGCAC-UUUAGGUAa -3'
miRNA:   3'- agUUUUAUUUUUCGUGcAGGUCCAUa -5'
31674 3' -42.3 NC_006883.1 + 24911 0.72 0.999984
Target:  5'- gCAGAuuuuGGAGCACuUCCAGGUGc -3'
miRNA:   3'- aGUUUuauuUUUCGUGcAGGUCCAUa -5'
31674 3' -42.3 NC_006883.1 + 174553 0.82 0.946178
Target:  5'- aUCAGAuaGAAAGGCugGUUCAGGUGg -3'
miRNA:   3'- -AGUUUuaUUUUUCGugCAGGUCCAUa -5'
31674 3' -42.3 NC_006883.1 + 146383 1.08 0.112352
Target:  5'- uUCAAAAUAAAAAGCACGUCCAGGUAUc -3'
miRNA:   3'- -AGUUUUAUUUUUCGUGCAGGUCCAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.