miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31676 3' -47.3 NC_006883.1 + 92207 0.66 0.999982
Target:  5'- gUGaCUUUaGAGCAGAAauuACCUGCGa -3'
miRNA:   3'- gACgGAAAcCUCGUUUUau-UGGACGU- -5'
31676 3' -47.3 NC_006883.1 + 96087 0.66 0.999966
Target:  5'- uCUGCUgaUGGAGCAAcuuuagGAUuagcACCUGUu -3'
miRNA:   3'- -GACGGaaACCUCGUU------UUAu---UGGACGu -5'
31676 3' -47.3 NC_006883.1 + 164627 0.67 0.99992
Target:  5'- uCUGCUauuaaugUGGcaguAGCAccaccaaguGAAUGACCUGCAa -3'
miRNA:   3'- -GACGGaa-----ACC----UCGU---------UUUAUUGGACGU- -5'
31676 3' -47.3 NC_006883.1 + 80264 0.67 0.999894
Target:  5'- gUGCCUcuagaUGGGGUuccgauACCUGCAu -3'
miRNA:   3'- gACGGAa----ACCUCGuuuuauUGGACGU- -5'
31676 3' -47.3 NC_006883.1 + 226165 0.68 0.999634
Target:  5'- aCUGCCgUUGGAGCAAGugcauUAGCUa--- -3'
miRNA:   3'- -GACGGaAACCUCGUUUu----AUUGGacgu -5'
31676 3' -47.3 NC_006883.1 + 48102 0.69 0.998421
Target:  5'- aCUGCCUuuucguaguUUGGGGCAAGAUAcAUgUGUu -3'
miRNA:   3'- -GACGGA---------AACCUCGUUUUAU-UGgACGu -5'
31676 3' -47.3 NC_006883.1 + 119988 0.7 0.9976
Target:  5'- aUGCCguuaacaaaagcaucUGGAGCAGAAgGAUCUGCc -3'
miRNA:   3'- gACGGaa-------------ACCUCGUUUUaUUGGACGu -5'
31676 3' -47.3 NC_006883.1 + 183934 1.09 0.02561
Target:  5'- uCUGCCUUUGGAGCAAAAUAACCUGCAc -3'
miRNA:   3'- -GACGGAAACCUCGUUUUAUUGGACGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.