Results 41 - 60 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31677 | 3' | -54.5 | NC_006883.1 | + | 23041 | 0.73 | 0.784793 |
Target: 5'- uGGUCCAacUGGUCCUcaAGGUCCuGCu -3' miRNA: 3'- -CCAGGUcuGCCAGGAugUCCAGGuUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 189405 | 0.72 | 0.810995 |
Target: 5'- uGGUUCAGuuGGUUCUuCGGGUgCAGCa -3' miRNA: 3'- -CCAGGUCugCCAGGAuGUCCAgGUUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 22877 | 0.72 | 0.810995 |
Target: 5'- aGGUCCAacUGGUCCUGCuggugcuccAGGUUUAACu -3' miRNA: 3'- -CCAGGUcuGCCAGGAUG---------UCCAGGUUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 222749 | 0.72 | 0.82771 |
Target: 5'- uGGUCCuguuGGAaauccUGGUCCUACuGGUCCuuCu -3' miRNA: 3'- -CCAGG----UCU-----GCCAGGAUGuCCAGGuuG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 21497 | 0.72 | 0.82771 |
Target: 5'- uGGUCCuucUGGUCCUcCAGGUCCu-- -3' miRNA: 3'- -CCAGGucuGCCAGGAuGUCCAGGuug -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 28366 | 0.72 | 0.82771 |
Target: 5'- --aCCAGGaGGUCCUGgAGGaCCAGCa -3' miRNA: 3'- ccaGGUCUgCCAGGAUgUCCaGGUUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 222659 | 0.72 | 0.835819 |
Target: 5'- uGGUCCuacuGGuucuccUGGUCCUGCuGGUCCuGCu -3' miRNA: 3'- -CCAGGu---CU------GCCAGGAUGuCCAGGuUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 24703 | 0.71 | 0.851505 |
Target: 5'- uGGUCCAucaGGUCCaAguGGUCCAAg -3' miRNA: 3'- -CCAGGUcugCCAGGaUguCCAGGUUg -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 21961 | 0.71 | 0.859069 |
Target: 5'- uGGUCCAagUGGUCCUcCuGGUCCuGCu -3' miRNA: 3'- -CCAGGUcuGCCAGGAuGuCCAGGuUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 27437 | 0.71 | 0.859069 |
Target: 5'- uGGU--GGAUcaGGUCCUACuGGUCCGACn -3' miRNA: 3'- -CCAggUCUG--CCAGGAUGuCCAGGUUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 21929 | 0.71 | 0.866439 |
Target: 5'- uGGUCC---UGGUCCUGCuGGUCCu-- -3' miRNA: 3'- -CCAGGucuGCCAGGAUGuCCAGGuug -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 111975 | 0.69 | 0.928524 |
Target: 5'- uGGUCCAGgugguaaacACGGUggUAgGGGUCCAGg -3' miRNA: 3'- -CCAGGUC---------UGCCAggAUgUCCAGGUUg -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 26707 | 0.69 | 0.928524 |
Target: 5'- aGGUCCuGcUGGUUCUcCAGGUCCu-- -3' miRNA: 3'- -CCAGGuCuGCCAGGAuGUCCAGGuug -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 21871 | 0.69 | 0.933511 |
Target: 5'- aGGaCCAGA-GGaCCaGCAGGUCCAGu -3' miRNA: 3'- -CCaGGUCUgCCaGGaUGUCCAGGUUg -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 26779 | 0.68 | 0.958757 |
Target: 5'- aGGaCCAGuuGGaCCUGCAGGaCCAGu -3' miRNA: 3'- -CCaGGUCugCCaGGAUGUCCaGGUUg -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 222713 | 0.67 | 0.965454 |
Target: 5'- aGGUUCAccUGGUCCUGCuGGUUCGc- -3' miRNA: 3'- -CCAGGUcuGCCAGGAUGuCCAGGUug -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 216981 | 0.67 | 0.971348 |
Target: 5'- aGGUCagauacuGACGGUCCUuuccCAGGaaCGGCa -3' miRNA: 3'- -CCAGgu-----CUGCCAGGAu---GUCCagGUUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 21979 | 0.67 | 0.974006 |
Target: 5'- uGGaCCAGGaGGaCCUGCAGGaCCAGg -3' miRNA: 3'- -CCaGGUCUgCCaGGAUGUCCaGGUUg -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 28138 | 0.67 | 0.976481 |
Target: 5'- uGGUCCuccaGGUCCUcCAGGUUCu-- -3' miRNA: 3'- -CCAGGucugCCAGGAuGUCCAGGuug -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 28105 | 0.66 | 0.980906 |
Target: 5'- aGGaCCAGuuGGaCCUGgAGGaCCAGCa -3' miRNA: 3'- -CCaGGUCugCCaGGAUgUCCaGGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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