miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31677 3' -54.5 NC_006883.1 + 27383 0.78 0.522953
Target:  5'- aGGUCCAG-CaGGUCCUcCAGGUCCu-- -3'
miRNA:   3'- -CCAGGUCuG-CCAGGAuGUCCAGGuug -5'
31677 3' -54.5 NC_006883.1 + 27437 0.71 0.859069
Target:  5'- uGGU--GGAUcaGGUCCUACuGGUCCGACn -3'
miRNA:   3'- -CCAggUCUG--CCAGGAUGuCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 27464 0.81 0.350098
Target:  5'- aGGUCCcacaGGACcaacuGGUCCcACAGGUCCAACu -3'
miRNA:   3'- -CCAGG----UCUG-----CCAGGaUGUCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 27821 0.84 0.255547
Target:  5'- aGGUCCuGcUGGUCCUcCAGGUCCAACu -3'
miRNA:   3'- -CCAGGuCuGCCAGGAuGUCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 27848 0.81 0.373342
Target:  5'- uGGUCCuacaGGaCCUACAGGUCCAACu -3'
miRNA:   3'- -CCAGGucugCCaGGAUGUCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 27875 0.75 0.65075
Target:  5'- uGGUCCAacUGGUCCUucagguggaACuGGUCCAACu -3'
miRNA:   3'- -CCAGGUcuGCCAGGA---------UGuCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 27973 0.87 0.17001
Target:  5'- uGGUCCuacugguggAGAUGGUCCUcCAGGUCCAACu -3'
miRNA:   3'- -CCAGG---------UCUGCCAGGAuGUCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 28009 0.76 0.601049
Target:  5'- uGGUCCAGGCGGa---ACuGGUCCAACu -3'
miRNA:   3'- -CCAGGUCUGCCaggaUGuCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 28033 0.75 0.65075
Target:  5'- uGGUCCuacuggugauGAUGGUCCUcCAGGUCCu-- -3'
miRNA:   3'- -CCAGGu---------CUGCCAGGAuGUCCAGGuug -5'
31677 3' -54.5 NC_006883.1 + 28069 0.82 0.327902
Target:  5'- aGGUCCAGGCGGaacuggUCCUGCuGGUCCu-- -3'
miRNA:   3'- -CCAGGUCUGCC------AGGAUGuCCAGGuug -5'
31677 3' -54.5 NC_006883.1 + 28105 0.66 0.980906
Target:  5'- aGGaCCAGuuGGaCCUGgAGGaCCAGCa -3'
miRNA:   3'- -CCaGGUCugCCaGGAUgUCCaGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 28138 0.67 0.976481
Target:  5'- uGGUCCuccaGGUCCUcCAGGUUCu-- -3'
miRNA:   3'- -CCAGGucugCCAGGAuGUCCAGGuug -5'
31677 3' -54.5 NC_006883.1 + 28228 0.8 0.38941
Target:  5'- uGGUCCAGGuggaacUGGUCCgACuGGUCCAACu -3'
miRNA:   3'- -CCAGGUCU------GCCAGGaUGuCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 28270 0.73 0.747142
Target:  5'- aGGUCCuucagguGGAagUGGUCCUcCAGGUCCAc- -3'
miRNA:   3'- -CCAGG-------UCU--GCCAGGAuGUCCAGGUug -5'
31677 3' -54.5 NC_006883.1 + 28366 0.72 0.82771
Target:  5'- --aCCAGGaGGUCCUGgAGGaCCAGCa -3'
miRNA:   3'- ccaGGUCUgCCAGGAUgUCCaGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 111975 0.69 0.928524
Target:  5'- uGGUCCAGgugguaaacACGGUggUAgGGGUCCAGg -3'
miRNA:   3'- -CCAGGUC---------UGCCAggAUgUCCAGGUUg -5'
31677 3' -54.5 NC_006883.1 + 189405 0.72 0.810995
Target:  5'- uGGUUCAGuuGGUUCUuCGGGUgCAGCa -3'
miRNA:   3'- -CCAGGUCugCCAGGAuGUCCAgGUUG- -5'
31677 3' -54.5 NC_006883.1 + 216981 0.67 0.971348
Target:  5'- aGGUCagauacuGACGGUCCUuuccCAGGaaCGGCa -3'
miRNA:   3'- -CCAGgu-----CUGCCAGGAu---GUCCagGUUG- -5'
31677 3' -54.5 NC_006883.1 + 222659 0.72 0.835819
Target:  5'- uGGUCCuacuGGuucuccUGGUCCUGCuGGUCCuGCu -3'
miRNA:   3'- -CCAGGu---CU------GCCAGGAUGuCCAGGuUG- -5'
31677 3' -54.5 NC_006883.1 + 222713 0.67 0.965454
Target:  5'- aGGUUCAccUGGUCCUGCuGGUUCGc- -3'
miRNA:   3'- -CCAGGUcuGCCAGGAUGuCCAGGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.