miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31677 3' -54.5 NC_006883.1 + 27437 0.71 0.859069
Target:  5'- uGGU--GGAUcaGGUCCUACuGGUCCGACn -3'
miRNA:   3'- -CCAggUCUG--CCAGGAUGuCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 27383 0.78 0.522953
Target:  5'- aGGUCCAG-CaGGUCCUcCAGGUCCu-- -3'
miRNA:   3'- -CCAGGUCuG-CCAGGAuGUCCAGGuug -5'
31677 3' -54.5 NC_006883.1 + 27284 0.86 0.206539
Target:  5'- aGGUCCAGGUGGUCCaggugguggcACAGGUCCAGCa -3'
miRNA:   3'- -CCAGGUCUGCCAGGa---------UGUCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 27230 0.89 0.126022
Target:  5'- aGGUCCAG-CaGGUCCUACAGGUCCAu- -3'
miRNA:   3'- -CCAGGUCuG-CCAGGAUGUCCAGGUug -5'
31677 3' -54.5 NC_006883.1 + 26779 0.68 0.958757
Target:  5'- aGGaCCAGuuGGaCCUGCAGGaCCAGu -3'
miRNA:   3'- -CCaGGUCugCCaGGAUGUCCaGGUUg -5'
31677 3' -54.5 NC_006883.1 + 26707 0.69 0.928524
Target:  5'- aGGUCCuGcUGGUUCUcCAGGUCCu-- -3'
miRNA:   3'- -CCAGGuCuGCCAGGAuGUCCAGGuug -5'
31677 3' -54.5 NC_006883.1 + 26521 0.78 0.503996
Target:  5'- uGGUCCuGcUGGUCCacCAGGUCCAACu -3'
miRNA:   3'- -CCAGGuCuGCCAGGauGUCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 26485 0.86 0.201626
Target:  5'- uGGUCCugcuGGugcaacUGGUCCUGCAGGUCCAACu -3'
miRNA:   3'- -CCAGGu---CU------GCCAGGAUGUCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 26395 0.98 0.036111
Target:  5'- uGGUCCAGACGGUCCUcCAGGUCCAGg -3'
miRNA:   3'- -CCAGGUCUGCCAGGAuGUCCAGGUUg -5'
31677 3' -54.5 NC_006883.1 + 26350 0.8 0.397611
Target:  5'- aGGUCCAacUGGUCCUGCuGGUCCcACa -3'
miRNA:   3'- -CCAGGUcuGCCAGGAUGuCCAGGuUG- -5'
31677 3' -54.5 NC_006883.1 + 26269 0.96 0.047057
Target:  5'- uGGUCCAG-CaGGUCCUACAGGUCCAGCa -3'
miRNA:   3'- -CCAGGUCuG-CCAGGAUGUCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 24739 0.83 0.286686
Target:  5'- cGGUCCuccaGGUCCUcCAGGUCCAACa -3'
miRNA:   3'- -CCAGGucugCCAGGAuGUCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 24703 0.71 0.851505
Target:  5'- uGGUCCAucaGGUCCaAguGGUCCAAg -3'
miRNA:   3'- -CCAGGUcugCCAGGaUguCCAGGUUg -5'
31677 3' -54.5 NC_006883.1 + 24678 0.77 0.581272
Target:  5'- -cUCCuccaGGUCCUACAGGUCCAAg -3'
miRNA:   3'- ccAGGucugCCAGGAUGUCCAGGUUg -5'
31677 3' -54.5 NC_006883.1 + 23701 0.74 0.729115
Target:  5'- uGGaCCAGAUGGaCCUGgAGGaCCAGCa -3'
miRNA:   3'- -CCaGGUCUGCCaGGAUgUCCaGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 23671 0.66 0.984677
Target:  5'- uGGUCCAacUGGUCCgACuGGUUCuGCu -3'
miRNA:   3'- -CCAGGUcuGCCAGGaUGuCCAGGuUG- -5'
31677 3' -54.5 NC_006883.1 + 23644 0.96 0.050931
Target:  5'- aGGUCCAG-CaGGUCCUACAGGUCCAACu -3'
miRNA:   3'- -CCAGGUCuG-CCAGGAUGUCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 23443 0.88 0.154
Target:  5'- uGGUCCAG-CaGGUCCUcCAGGUCCAGCa -3'
miRNA:   3'- -CCAGGUCuG-CCAGGAuGUCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 23416 0.77 0.55188
Target:  5'- uGGUCCuGcUGGUCCUcCAGGUCCAu- -3'
miRNA:   3'- -CCAGGuCuGCCAGGAuGUCCAGGUug -5'
31677 3' -54.5 NC_006883.1 + 23146 0.92 0.081538
Target:  5'- uGGaCCAGAUGGUCCUACAGGUCCAc- -3'
miRNA:   3'- -CCaGGUCUGCCAGGAUGUCCAGGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.